SimCT: a generic tool to visualize ontology-based relationships for biological objects.
Ontology highlight
ABSTRACT: Unlabelled
We present a web-based service, SimCT, which allows to graphically display the relationships between biological objects (e.g. genes or proteins) based on their annotations to a biomedical ontology. The result is presented as a tree of these objects, which can be viewed and explored through a specific java applet designed to highlight relevant features. Unlike the numerous tools that search for overrepresented terms, SimCT draws a simplified representation of biological terms present in the set of objects, and can be applied to any ontology for which annotation data is available. Being web-based, it does not require prior installation, and provides an intuitive, easy-to-use service.Availability
http://tagc.univ-mrs.fr/SimCT.Supplementary information
Supplementary data are available at Bioinformatics online.
SUBMITTER: Herrmann C
PROVIDER: S-EPMC2778334 | biostudies-literature | 2009 Dec
REPOSITORIES: biostudies-literature
Publications
SimCT: a generic tool to visualize ontology-based relationships for biological objects.
Herrmann Carl C Bérard Sèverine S Tichit Laurent L
Bioinformatics (Oxford, England) 20090923 23
<h4>Unlabelled</h4>We present a web-based service, SimCT, which allows to graphically display the relationships between biological objects (e.g. genes or proteins) based on their annotations to a biomedical ontology. The result is presented as a tree of these objects, which can be viewed and explored through a specific java applet designed to highlight relevant features. Unlike the numerous tools that search for overrepresented terms, SimCT draws a simplified representation of biological terms p ...[more]
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