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Next generation software for functional trend analysis.


ABSTRACT: FuncAssociate is a web application that discovers properties enriched in lists of genes or proteins that emerge from large-scale experimentation. Here we describe an updated application with a new interface and several new features. For example, enrichment analysis can now be performed within multiple gene- and protein-naming systems. This feature avoids potentially serious translation artifacts to which other enrichment analysis strategies are subject.The FuncAssociate web application is freely available to all users at http://llama.med.harvard.edu/funcassociate.

SUBMITTER: Berriz GF 

PROVIDER: S-EPMC2800365 | biostudies-literature | 2009 Nov

REPOSITORIES: biostudies-literature

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Next generation software for functional trend analysis.

Berriz Gabriel F GF   Beaver John E JE   Cenik Can C   Tasan Murat M   Roth Frederick P FP  

Bioinformatics (Oxford, England) 20090828 22


<h4>Unlabelled</h4>FuncAssociate is a web application that discovers properties enriched in lists of genes or proteins that emerge from large-scale experimentation. Here we describe an updated application with a new interface and several new features. For example, enrichment analysis can now be performed within multiple gene- and protein-naming systems. This feature avoids potentially serious translation artifacts to which other enrichment analysis strategies are subject.<h4>Availability</h4>The  ...[more]

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