Ontology highlight
ABSTRACT:
SUBMITTER: Gopal SM
PROVIDER: S-EPMC2822037 | biostudies-literature | 2010 Apr
REPOSITORIES: biostudies-literature
Gopal Srinivasa M SM Mukherjee Shayantani S Cheng Yi-Ming YM Feig Michael M
Proteins 20100401 5
The new coarse graining model PRIMO/PRIMONA for proteins and nucleic acids is proposed. This model combines one to several heavy atoms into coarse-grained sites that are chosen to allow an analytical, high-resolution reconstruction of all-atom models based on molecular bonding geometry constraints. The accuracy of proposed reconstruction method in terms of structure and energetics is tested and compared with other popular reconstruction methods for a variety of protein and nucleic acid test sets ...[more]