Dataset Information

Thermal adaptation of viruses and bacteria.

ABSTRACT: A previously established multiscale population genetics model posits that fitness can be inferred from the physical properties of proteins under the physiological assumption that a loss of stability by any protein confers the lethal phenotype to an organism. Here, we develop this model further by positing that replication rate (fitness) of a bacterial or viral strain directly depends on the copy number of folded proteins, which determine its replication rate. Using this model, and both numerical and analytical approaches, we studied the adaptation process of bacteria and viruses at varied environmental temperatures. We found that a broad distribution of protein stabilities observed in the model and in experiment is the key determinant of thermal response for viruses and bacteria. Our results explain most of the earlier experimental observations: the striking asymmetry of thermal response curves; the absence of evolutionary tradeoff, which was expected but not found in experiments; correlation between denaturation temperature for several protein families and the optimal growth temperature of their carrier organisms; and proximity of bacterial or viral optimal growth temperatures to their evolutionary temperatures. Our theory quantitatively and with high accuracy described thermal response curves for 35 bacterial species using, for each species, only two adjustable parameters-the number of rate-determining genes and the energy barrier for metabolic reactions.

SUBMITTER: Chen P

PROVIDER: S-EPMC2849055 | biostudies-literature | 2010 Apr

REPOSITORIES: biostudies-literature

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Thermal adaptation of viruses and bacteria.

Chen Peiqiu P Shakhnovich Eugene I EI

Biophysical journal 20100401 7

A previously established multiscale population genetics model posits that fitness can be inferred from the physical properties of proteins under the physiological assumption that a loss of stability by any protein confers the lethal phenotype to an organism. Here, we develop this model further by positing that replication rate (fitness) of a bacterial or viral strain directly depends on the copy number of folded proteins, which determine its replication rate. Using this model, and both numerical ...[more]

PMID: 20371310

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Project description:Cage washing is a key process of the biosecurity program in rodent facilities. For the current study, we developed systems (i. e., magnet attachments, quantitative biologic indicators (Q-BI), and measurement of thermal disinfection at equipment level) to assess the microbial decontamination achieved by a rodent equipment washer with and without thermal disinfection. 99% of the magnets remained in position to hold Q-BI and temperature probes inside cages, water bottles or at equipment level across a cabinet washer chamber with loads dedicated to either housing or drinking devices. Various types of Q-BI for Bacillus atrophaeus, Enterococcus hirae and minute virus of mice were tested. To simulate potential interference from biologic material and animal waste during cage processing, Q-BI contained test soil: bovine serum albumin with or without feces. As a quantitative indicator of microbial decontamination, the reduction factor was calculated by comparing microbial load of processed Q-BI with unprocessed controls. We detected variation between Q-BI types and assessed the washer's ability to reduce microbial load on equipment. Reduction factor results were consistent with the Q-BI type and showed that the washing and thermal disinfection cycle could reduce loads of vegetative bacteria, virus and spore by 5 log10 CFU/TCID50 and beyond. Thermal disinfection was monitored with temperature probes linked to data loggers recording live. We measured the period of exposure to temperatures above 82.2 °C, to calculate A0, the theoretical indicator for microbial lethality by thermal disinfection, and to assess whether the cabinet washer could pass the minimum quality standard of A0 = 600. Temperature curves showed an A0 > 1000 consistently across all processed equipment during thermal disinfection. These data suggest that, when sterilization is not required, a cabinet washer with thermal disinfection could replace an autoclave and reduce environmental and financial waste.

Dataset Information

Thermal adaptation of viruses and bacteria.

Publications

Thermal adaptation of viruses and bacteria.

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