Unknown

Dataset Information

0

ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing.


ABSTRACT: Chromatin interaction analysis with paired-end tag sequencing (ChIA-PET) is a new technology to study genome-wide long-range chromatin interactions bound by protein factors. Here we present ChIA-PET Tool, a software package for automatic processing of ChIA-PET sequence data, including linker filtering, mapping tags to reference genomes, identifying protein binding sites and chromatin interactions, and displaying the results on a graphical genome browser. ChIA-PET Tool is fast, accurate, comprehensive, user-friendly, and open source (available at http://chiapet.gis.a-star.edu.sg).

SUBMITTER: Li G 

PROVIDER: S-EPMC2872882 | biostudies-literature | 2010

REPOSITORIES: biostudies-literature

altmetric image

Publications


Chromatin interaction analysis with paired-end tag sequencing (ChIA-PET) is a new technology to study genome-wide long-range chromatin interactions bound by protein factors. Here we present ChIA-PET Tool, a software package for automatic processing of ChIA-PET sequence data, including linker filtering, mapping tags to reference genomes, identifying protein binding sites and chromatin interactions, and displaying the results on a graphical genome browser. ChIA-PET Tool is fast, accurate, comprehe  ...[more]

Similar Datasets

| S-EPMC4303937 | biostudies-literature
| S-EPMC8351913 | biostudies-literature
2012-07-19 | E-GEOD-39495 | biostudies-arrayexpress
| S-EPMC6678675 | biostudies-literature
2012-07-19 | GSE39495 | GEO
2019-04-11 | GSE121517 | GEO
2012-10-04 | E-GEOD-32674 | biostudies-arrayexpress
| PRJNA497538 | ENA
2014-06-27 | E-GEOD-57911 | biostudies-arrayexpress
| S-EPMC3083083 | biostudies-other