ProBiS: a web server for detection of structurally similar protein binding sites.
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ABSTRACT:
SUBMITTER: Konc J
PROVIDER: S-EPMC2896105 | biostudies-literature | 2010 Jul
REPOSITORIES: biostudies-literature
Publications
ProBiS: a web server for detection of structurally similar protein binding sites.
Konc Janez J Janezic Dusanka D
Nucleic acids research 20100526 Web Server issue
A web server, ProBiS, freely available at http://probis.cmm.ki.si, is presented. This provides access to the program ProBiS (Protein Binding Sites), which detects protein binding sites based on local structural alignments. Detailed instructions and user guidelines for use of ProBiS are available at the server under 'HELP' and selected examples are provided under 'EXAMPLES'. ...[more]
Similar Datasets
Project description:The ProBiS web server is a web server for detection of structurally similar binding sites in the PDB and for local pairwise alignment of protein structures. In this article, we present a new version of the ProBiS web server that is 10 times faster than earlier versions, due to the efficient parallelization of the ProBiS algorithm, which now allows significantly faster comparison of a protein query against the PDB and reduces the calculation time for scanning the entire PDB from hours to minutes. It also features new web services, and an improved user interface. In addition, the new web server is united with the ProBiS-Database and thus provides instant access to pre-calculated protein similarity profiles for over 29?000 non-redundant protein structures. The ProBiS web server is particularly adept at detection of secondary binding sites in proteins. It is freely available at http://probis.cmm.ki.si/old-version, and the new ProBiS web server is at http://probis.cmm.ki.si.
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