Ontology highlight
ABSTRACT:
SUBMITTER: Chen P
PROVIDER: S-EPMC2929137 | biostudies-literature | 2008 Dec
REPOSITORIES: biostudies-literature
International journal of data mining and bioinformatics 20081201
A contact map is a key factor representing a specific protein structure. To simplify the protein contact map prediction, we predict the inter-residue contact clusters centered at the groups of their surrounding inter-residue contacts. In this paper, we adopt a Support Vector Machine (SVM)-based approach to predict the inter-residue contact cluster centers. The input of the SVM predictor includes sequence profile, evolutionary rate and predicted secondary structure. The SVM predictor is based on ...[more]