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A standard variation file format for human genome sequences.

ABSTRACT: Here we describe the Genome Variation Format (GVF) and the 10Gen dataset. GVF, an extension of Generic Feature Format version 3 (GFF3), is a simple tab-delimited format for DNA variant files, which uses Sequence Ontology to describe genome variation data. The 10Gen dataset, ten human genomes in GVF format, is freely available for community analysis from the Sequence Ontology website and from an Amazon elastic block storage (EBS) snapshot for use in Amazon's EC2 cloud computing environment.

SUBMITTER: Reese MG

PROVIDER: S-EPMC2945790 | biostudies-literature | 2010

REPOSITORIES: biostudies-literature

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A standard variation file format for human genome sequences.

Reese Martin G MG Moore Barry B Batchelor Colin C Salas Fidel F Cunningham Fiona F Marth Gabor T GT Stein Lincoln L Flicek Paul P Yandell Mark M Eilbeck Karen K

Genome biology 20100826 8

Here we describe the Genome Variation Format (GVF) and the 10Gen dataset. GVF, an extension of Generic Feature Format version 3 (GFF3), is a simple tab-delimited format for DNA variant files, which uses Sequence Ontology to describe genome variation data. The 10Gen dataset, ten human genomes in GVF format, is freely available for community analysis from the Sequence Ontology website and from an Amazon elastic block storage (EBS) snapshot for use in Amazon's EC2 cloud computing environment. ...[more]

PMID: 20796305

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