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Interactive microbial genome visualization with GView.

ABSTRACT: SUMMARY: GView is a Java application for viewing and examining prokaryotic genomes in a circular or linear context. It accepts standard sequence file formats and an optional style specification file to generate customizable, publication quality genome maps in bitmap and scalable vector graphics formats. GView features an interactive pan-and-zoom interface, a command-line interface for incorporation in genome analysis pipelines, and a public Application Programming Interface for incorporation in other Java applications. AVAILABILITY: GView is a freely available application licensed under the GNU Public License. The application, source code, documentation, file specifications, tutorials and image galleries are available at http://gview.ca.

SUBMITTER: Petkau A

PROVIDER: S-EPMC2995121 | biostudies-literature | 2010 Dec

REPOSITORIES: biostudies-literature

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Interactive microbial genome visualization with GView.

Petkau Aaron A Stuart-Edwards Matthew M Stothard Paul P Van Domselaar Gary G

Bioinformatics (Oxford, England) 20101017 24

<h4>Summary</h4>GView is a Java application for viewing and examining prokaryotic genomes in a circular or linear context. It accepts standard sequence file formats and an optional style specification file to generate customizable, publication quality genome maps in bitmap and scalable vector graphics formats. GView features an interactive pan-and-zoom interface, a command-line interface for incorporation in genome analysis pipelines, and a public Application Programming Interface for incorporat ...[more]

PMID: 20956244

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