Unknown

Dataset Information

0

PRTAD: a database for protein residue torsion angle distributions.

ABSTRACT: PRTAD is a dedicated database and structural bioinformatics system for protein analysis and modelling. The database is developed to host and analyse the statistical data for protein residue level 'virtual' bond and torsion angles obtained from their distributions in databases of known protein structures such as in the PDB Data Bank. PRTAD is capable of generating, caching, and displaying the statistical distributions of the angles of various types. The collected information can be used to extract geometric restraints or define statistical potentials for protein structure determination. PRTAD is supported with a friendly designed web interface so that users can easily specify the angle types, and retrieve, visualise, or download the distributions of the angles as they desire.

SUBMITTER: Sun X 

PROVIDER: S-EPMC3018885 | biostudies-literature | 2009

REPOSITORIES: biostudies-literature

Json Xml
altmetric image

Publications

PRTAD: a database for protein residue torsion angle distributions.

Sun Xiaoyong X   Di Wu W   Jernigan Robert R   Wu Zhijun Z  

International journal of data mining and bioinformatics 20090101 4

PRTAD is a dedicated database and structural bioinformatics system for protein analysis and modelling. The database is developed to host and analyse the statistical data for protein residue level 'virtual' bond and torsion angles obtained from their distributions in databases of known protein structures such as in the PDB Data Bank. PRTAD is capable of generating, caching, and displaying the statistical distributions of the angles of various types. The collected information can be used to extrac  ...[more]

Similar Datasets

Unknown Quantitative residue-specific protein backbone torsion angle dynamics from concerted measurement of 3J couplings.
| S-EPMC4318723 | biostudies-literature
Unknown PREDITOR: a web server for predicting protein torsion angle restraints.
| S-EPMC1538894 | biostudies-literature
Unknown MERA: a webserver for evaluating backbone torsion angle distributions in dynamic and disordered proteins from NMR data.
| S-EPMC4577467 | biostudies-literature
Unknown A maximum entropy approach to the study of residue-specific backbone angle distributions in α-synuclein, an intrinsically disordered protein.
| S-EPMC4243998 | biostudies-literature
Unknown ANGLOR: a composite machine-learning algorithm for protein backbone torsion angle prediction.
| S-EPMC2559866 | biostudies-literature
Unknown TAP score: torsion angle propensity normalization applied to local protein structure evaluation.
| S-EPMC1878508 | biostudies-literature
Unknown Smooth statistical torsion angle potential derived from a large conformational database via adaptive kernel density estimation improves the quality of NMR protein structures.
| S-EPMC3575913 | biostudies-literature
Unknown PIDD: database for Protein Inter-atomic Distance Distributions.
| S-EPMC1781147 | biostudies-literature
Unknown Backbone Torsion Angle Determination Using Proton Detected Magic-Angle Spinning Nuclear Magnetic Resonance.
| S-EPMC8762656 | biostudies-literature
Unknown Prediction of Protein Loop Conformations using the AGBNP Implicit Solvent Model and Torsion Angle Sampling.
| S-EPMC2533438 | biostudies-literature