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Practical measures of integrated information for time-series data.

ABSTRACT: A recent measure of 'integrated information', ?(DM), quantifies the extent to which a system generates more information than the sum of its parts as it transitions between states, possibly reflecting levels of consciousness generated by neural systems. However, ?(DM) is defined only for discrete Markov systems, which are unusual in biology; as a result, ?(DM) can rarely be measured in practice. Here, we describe two new measures, ?(E) and ?(AR), that overcome these limitations and are easy to apply to time-series data. We use simulations to demonstrate the in-practice applicability of our measures, and to explore their properties. Our results provide new opportunities for examining information integration in real and model systems and carry implications for relations between integrated information, consciousness, and other neurocognitive processes. However, our findings pose challenges for theories that ascribe physical meaning to the measured quantities.

SUBMITTER: Barrett AB

PROVIDER: S-EPMC3024259 | biostudies-literature | 2011 Jan

REPOSITORIES: biostudies-literature

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Practical measures of integrated information for time-series data.

Barrett Adam B AB Seth Anil K AK

PLoS computational biology 20110120 1

A recent measure of 'integrated information', Φ(DM), quantifies the extent to which a system generates more information than the sum of its parts as it transitions between states, possibly reflecting levels of consciousness generated by neural systems. However, Φ(DM) is defined only for discrete Markov systems, which are unusual in biology; as a result, Φ(DM) can rarely be measured in practice. Here, we describe two new measures, Φ(E) and Φ(AR), that overcome these limitations and are easy to ap ...[more]

PMID: 21283779

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Project description:BACKGROUND:As part of a partnership between the Institute for Healthcare Improvement and the Ethiopian Federal Ministry of Health, woreda-based quality improvement collaboratives took place between November 2016 and December 2017 aiming to accelerate reduction of maternal and neonatal mortality in Lemu Bilbilu, Tanqua Abergele and Duguna Fango woredas. Before starting the collaboratives, assessments found inaccuracies in core measures obtained from Health Management Information System reports. METHODS AND RESULTS:Building on the quality improvement collaborative design, data quality improvement activities were added and we used the World Health Organization review methodology to drive a verification factor for the core measures of number of pregnant women that received their first antenatal care visit, number of pregnant women that received antenatal care on at least four visits, number of pregnant women tested for syphilis and number of births attended by skilled health personnel. Impact of the data quality improvement was assessed using interrupted time series analysis. We found accurate data across all time periods for Tanqua Abergele. In Lemu Bilbilu and Duguna Fango, data quality improved for all core metrics over time. In Duguna Fango, the verification factor for number of pregnant women that received their first antenatal care visit improved from 0.794 (95%CI 0.753, 0.836; p<0.001) pre-intervention by 0.173 (95%CI 0.128, 0.219; p<0.001) during the collaborative; and the verification factor for number of pregnant women tested for syphilis improved from 0.472 (95%CI 0.390, 0.554; p<0.001) pre-intervention by 0.460 (95%CI 0.369, 0.552; p<0.001) during the collaborative. In Lemu Bilbilu, the verification factor for number of pregnant women receiving a fourth antenatal visit rose from 0.589 (95%CI 0.513, 0.664; p<0.001) at baseline by 0.358 (95%CI 0.258, 0.458; p<0.001) post-intervention; and skilled birth attendance rose from 0.917 (95%CI 0.869, 0.965) at baseline by 0.083 (95%CI 0.030, 0.136; p<0.001) during the collaborative. CONCLUSIONS:A Data quality improvement initiative embedded within woreda clinical improvement collaborative improved accuracy of data used to monitor maternal and newborn health services in Ethiopia.

Project description:Time series sensor data classification tasks often suffer from training data scarcity issue due to the expenses associated with the expert-intervened annotation efforts. For example, Electrocardiogram (ECG) data classification for cardio-vascular disease (CVD) detection requires expensive labeling procedures with the help of cardiologists. Current state-of-the-art algorithms like deep learning models have shown outstanding performance under the general requirement of availability of large set of training examples. In this paper, we propose Shapley Attributed Ablation with Augmented Learning: ShapAAL, which demonstrates that deep learning algorithm with suitably selected subset of the seen examples or ablating the unimportant ones from the given limited training dataset can ensure consistently better classification performance under augmented training. In ShapAAL, additive perturbed training augments the input space to compensate the scarcity in training examples using Residual Network (ResNet) architecture through perturbation-induced inputs, while Shapley attribution seeks the subset from the augmented training space for better learnability with the goal of better general predictive performance, thanks to the “efficiency” and “null player” axioms of transferable utility games upon which Shapley value game is formulated. In ShapAAL, the subset of training examples that contribute positively to a supervised learning setup is derived from the notion of coalition games using Shapley values associated with each of the given inputs’ contribution into the model prediction. ShapAAL is a novel push-pull deep architecture where the subset selection through Shapley value attribution pushes the model to lower dimension while augmented training augments the learning capability of the model over unseen data. We perform ablation study to provide the empirical evidence of our claim and we show that proposed ShapAAL method consistently outperforms the current baselines and state-of-the-art algorithms for time series sensor data classification tasks from publicly available UCR time series archive that includes different practical important problems like detection of CVDs from ECG data.

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Practical measures of integrated information for time-series data.

Publications

Practical measures of integrated information for time-series data.

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