Dataset Information

Pseudogenization of the tooth gene enamelysin (MMP20) in the common ancestor of extant baleen whales.

ABSTRACT: Whales in the suborder Mysticeti are filter feeders that use baleen to sift zooplankton and small fish from ocean waters. Adult mysticetes lack teeth, although tooth buds are present in foetal stages. Cladistic analyses suggest that functional teeth were lost in the common ancestor of crown-group Mysticeti. DNA sequences for the tooth-specific genes, ameloblastin (AMBN), enamelin (ENAM) and amelogenin (AMEL), have frameshift mutations and/or stop codons in this taxon, but none of these molecular cavities are shared by all extant mysticetes. Here, we provide the first evidence for pseudogenization of a tooth gene, enamelysin (MMP20), in the common ancestor of living baleen whales. Specifically, pseudogenization resulted from the insertion of a CHR-2 SINE retroposon in exon 2 of MMP20. Genomic and palaeontological data now provide congruent support for the loss of enamel-capped teeth on the common ancestral branch of crown-group mysticetes. The new data for MMP20 also document a polymorphic stop codon in exon 2 of the pygmy sperm whale (Kogia breviceps), which has enamel-less teeth. These results, in conjunction with the evidence for pseudogenization of MMP20 in Hoffmann's two-toed sloth (Choloepus hoffmanni), another enamel-less species, support the hypothesis that the only unique, non-overlapping function of the MMP20 gene is in enamel formation.

SUBMITTER: Meredith RW

PROVIDER: S-EPMC3049022 | biostudies-literature | 2011 Apr

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Pseudogenization of the tooth gene enamelysin (MMP20) in the common ancestor of extant baleen whales.

Meredith Robert W RW Gatesy John J Cheng Joyce J Springer Mark S MS

Proceedings. Biological sciences 20100922 1708

Whales in the suborder Mysticeti are filter feeders that use baleen to sift zooplankton and small fish from ocean waters. Adult mysticetes lack teeth, although tooth buds are present in foetal stages. Cladistic analyses suggest that functional teeth were lost in the common ancestor of crown-group Mysticeti. DNA sequences for the tooth-specific genes, ameloblastin (AMBN), enamelin (ENAM) and amelogenin (AMEL), have frameshift mutations and/or stop codons in this taxon, but none of these molecular ...[more]

PMID: 20861053

Similar Datasets

Project description:BACKGROUND:Anatomical comparisons of the ear region of baleen whales (Mysticeti) are provided through detailed osteological descriptions and high-resolution photographs of the petrotympanic complex (tympanic bulla and petrosal bone) of all extant species of mysticete cetaceans. Salient morphological features are illustrated and identified, including overall shape of the bulla, size of the conical process of the bulla, morphology of the promontorium, and the size and shape of the anterior process of the petrosal. We place our comparative osteological observations into a phylogenetic context in order to initiate an exploration into petrotympanic evolution within Mysticeti. PRINCIPAL FINDINGS:The morphology of the petrotympanic complex is diagnostic for individual species of baleen whale (e.g., sigmoid and conical processes positioned at midline of bulla in Balaenoptera musculus; confluence of fenestra cochleae and perilymphatic foramen in Eschrichtius robustus), and several mysticete clades are united by derived characteristics. Balaenids and neobalaenids share derived features of the bulla, such as a rhomboid shape and a reduced anterior lobe (swelling) in ventral aspect, and eschrichtiids share derived morphologies of the petrosal with balaenopterids, including loss of a medial promontory groove and dorsomedial elongation of the promontorium. Monophyly of Balaenoidea (Balaenidae and Neobalaenidae) and Balaenopteroidea (Balaenopteridae and Eschrichtiidae) was recovered in phylogenetic analyses utilizing data exclusively from the petrotympanic complex. SIGNIFICANCE:This study fills a major gap in our knowledge of the complex structures of the mysticete petrotympanic complex, which is an important anatomical region for the interpretation of the evolutionary history of mammals. In addition, we introduce a novel body of phylogenetically informative characters from the ear region of mysticetes. Our detailed anatomical descriptions, illustrations, and comparisons provide valuable data for current and future studies on the phylogenetic relationships, evolution, and auditory physiology of mysticetes and other cetaceans throughout Earth's history.

Project description:Background:Family Cetotheriidae sensu stricto and several closely related taxa comprise the Cetotherioidea and represent a lineage of Neogene baleen whales that includes the smallest edentulous baleen whales in Earth history. Most of known cetotheriids came from the Late Miocene to Quaternary, and the earliest records from the latest Middle Miocene. The Paratethys region shows a great diversity of Middle to Late Miocene cetotheriids. That includes nominative taxon of the family, Cetotherium rathkii, and this suggests that the earliest cetotheriids may have lived in that region. Materials and methods:Here, Ciuciulea davidi, a new genus and species from the Middle Miocene of southeastern Europe, is described as the chronologically earliest and earliest diverging member of Cetotheriidae. Also, a new specimen of Otradnocetus, a basal Cetotherioidea sensu Gol'din & Steeman, 2015 is identified from the Late Miocene deposits of Caucasus and compared with Otradnocetus virodovi from the Middle Miocene of the same region. Results and discussion:Ciuciulea davidi is a dwarf whale displaying primitive traits: posterior ends of facial bones forming a single transverse line, a narrow occipital shield, and a relatively long interparietal region. Meanwhile, it shares some cetotheriid apomorphies: posteriorly telescoped wedge-shaped facial bones and an ovoid tympanic bulla with shallow lateral and medial furrows, a short anterior lobe and a short sigmoid process. Phylogenetic analysis suggests that Parietobalaena and Otradnocetus are branches diverging before the clade Cetotheriidae + Neobalaenidae. This is confirmed by the stepwise evolution of the anatomy of the squamosal, mandible, and ear bones across these groups. The re-described juvenile specimen of Otradnocetus differs from O. virodovi in the more primitive anatomy of the mandible and the autapomorphic anatomy of the humerus. Records of the earliest cetotheriids and related taxa in the Paratethys support the idea that this could be the region where Cetotheriidae evolved before their worldwide dispersal and radiation.

Dataset Information

Pseudogenization of the tooth gene enamelysin (MMP20) in the common ancestor of extant baleen whales.

Publications

Pseudogenization of the tooth gene enamelysin (MMP20) in the common ancestor of extant baleen whales.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets