Ontology highlight
ABSTRACT:
SUBMITTER: Lu XJ
PROVIDER: S-EPMC3065354 | biostudies-literature | 2008
REPOSITORIES: biostudies-literature
Lu Xiang-Jun XJ Olson Wilma K WK
Nature protocols 20080101 7
We present a set of protocols showing how to use the 3DNA suite of programs to analyze, rebuild and visualize three-dimensional nucleic-acid structures. The software determines a wide range of conformational parameters, including the identities and rigid-body parameters of interacting bases and base-pair steps, the nucleotides comprising helical fragments, the area of overlap of stacked bases and so on. The reconstruction of three-dimensional structure takes advantage of rigorously defined rigid ...[more]