PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries.
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ABSTRACT:
SUBMITTER: Uenishi H
PROVIDER: S-EPMC308771 | biostudies-literature | 2004 Jan
REPOSITORIES: biostudies-literature
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PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries.
Uenishi Hirohide H Eguchi Tomoko T Suzuki Kohei K Sawazaki Tetsuya T Toki Daisuke D Shinkai Hiroki H Okumura Naohiko N Hamasima Noriyuki N Awata Takashi T
Nucleic acids research 20040101 Database issue
We generated the PEDE (Pig EST Data Explorer; http://pede.dna.affrc.go.jp/) database using sequences assembled from porcine 5' ESTs from oligo-capped full-length cDNA libraries. Thus far we have performed EST analysis of various organs (thymus, spleen, uterus, lung, liver, ovary and peripheral blood mononuclear cells) and assembled 68,076 high-quality sequences into 5546 contigs and 28,461 singlets. PEDE provides a search interface for getting results of homology searches and enables users to ob ...[more]
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