Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

?-Conjugation of two nitronyl nitroxides-attached diarylethenes.

ABSTRACT: Unusual blue shift of the absorption maxima of two nitronyl nitroxide attached diarylethene through phenyl units (DAE-phe-NN) with increasing number of phenyl units is examined by time dependent density functional theory (TDDFT). The extended ?-conjugation between nitronyl nitroxide and diarylethene is rather suppressed by the bridge phenyl units. In comparison, the red shift found in two nitronyl nitroxide attached diarylethenes through thiophene units (DAE-thio-NN) with increasing number of thiophene units is due to the longer ?-conjugation induced by smaller dihedral angles between diarylethene and bridge and between bridges.

SUBMITTER: Yokojima S

PROVIDER: S-EPMC3089375 | biostudies-literature | 2011 May

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

π-Conjugation of two nitronyl nitroxides-attached diarylethenes.

Yokojima Satoshi S Kobayashi Takao T Shinoda Keiko K Matsuda Kenji K Higashiguchi Kenji K Nakamura Shinichiro S

The journal of physical chemistry. B 20110328 18

Unusual blue shift of the absorption maxima of two nitronyl nitroxide attached diarylethene through phenyl units (DAE-phe-NN) with increasing number of phenyl units is examined by time dependent density functional theory (TDDFT). The extended π-conjugation between nitronyl nitroxide and diarylethene is rather suppressed by the bridge phenyl units. In comparison, the red shift found in two nitronyl nitroxide attached diarylethenes through thiophene units (DAE-thio-NN) with increasing number of th ...[more]

PMID: 21443230

Similar Datasets

A DNA-Based Two-Component Excitonic Switch Utilizing High-Performance Diarylethenes.

Project description:Nucleosidic diarylethenes (DAEs) are an emerging class of photochromes but have rarely been used in materials science. Here, we have developed doubly methylated DAEs derived from 2'-deoxyuridine with high thermal stability and fatigue resistance. These new photoswitches not only outperform their predecessors but also rival classical non-nucleosidic DAEs. To demonstrate the utility of these new DAEs, we have designed an all-optical excitonic switch consisting of two oligonucleotides: one strand containing a fluorogenic double-methylated 2'-deoxyuridine as a fluorescence donor and the other a tricyclic cytidine (tC) as acceptor, which together form a highly efficient conditional Förster-Resonance-Energy-Transfer (FRET) pair. The system was operated in liquid and solid phases and showed both strong distance- and orientation-dependent photochromic FRET. The superior ON/OFF contrast was maintained over up to 100 switching cycles, with no detectable fatigue.

| S-EPMC9305942 | biostudies-literature

Fluorescence On/Off Switching in Nanoparticles Consisting of Two Types of Diarylethenes.

Project description:Single- and double-component nanoparticles consisting of two types of diarylethenes, 1,2-bis(3-methyl-5-phenyl-2-thienyl)perfluorocyclopentene (1a) and 1,2-bis(2-methyl-5-phenyl-3-thienyl)perfluorocyclopentene (2a), were fabricated by a reprecipitation method. Nanoparticles consisting of 1a exhibited orange or green fluorescence depending on the fabrication condition and did not undergo any photocyclization reaction. On the other hand, nanoparticles consisting of 2a underwent photoreversible photochromic reactions upon alternating irradiation with ultraviolet and visible light. Nanoparticles consisting of 1a and 2a exhibited fluorescence on/off switching with rapid switching speed and high on/off contrast, accompanying the photochromic reactions of 2a. The dependence of fluorescence on/off switching properties on Förster distance and molar fraction was observed and quantitatively evaluated by a simplified model.

| S-EPMC6641326 | biostudies-literature

Fluorescent DNA nanotags featuring covalently attached intercalating dyes: synthesis, antibody conjugation, and intracellular imaging.

Project description:We have synthesized fluorescent DNA duplexes featuring multiple thiazole orange (TO) intercalating dyes covalently attached to the DNA via a triazole linkage. The intercalating dyes stabilize the duplex against thermal denaturation and show bright fluorescence in the green region of the spectrum. The emission color can be changed to orange or red by addition of energy-accepting Cy3 or Cy5 dyes attached covalently to the DNA duplex. The dye-modified DNA duplexes were then attached to a secondary antibody for intracellular fluorescence imaging of centrosomes in Drosophila embryos. Bright fluorescent foci were observed at the centrosomes in both the donor (TO) and acceptor (Cy5) channels, because the energy transfer efficiency is moderate. Monitoring the Cy5 emission channel significantly minimized the background signal because of the large shift in emission wavelength allowed by energy transfer.

| S-EPMC3163149 | biostudies-literature

Two-photon fluorescence microscopy imaging of cellular oxidative stress using profluorescent nitroxides.

Project description:A range of varying chromophore nitroxide free radicals and their nonradical methoxyamine analogues were synthesized and their linear photophysical properties examined. The presence of the proximate free radical masks the chromophore's usual fluorescence emission, and these species are described as profluorescent. Two nitroxides incorporating anthracene and fluorescein chromophores (compounds 7 and 19, respectively) exhibited two-photon absorption (2PA) cross sections of approximately 400 G.M. when excited at wavelengths greater than 800 nm. Both of these profluorescent nitroxides demonstrated low cytotoxicity toward Chinese hamster ovary (CHO) cells. Imaging colocalization experiments with the commercially available CellROX Deep Red oxidative stress monitor demonstrated good cellular uptake of the nitroxide probes. Sensitivity of the nitroxide probes to H(2)O(2)-induced damage was also demonstrated by both one- and two-photon fluorescence microscopy. These profluorescent nitroxide probes are potentially powerful tools for imaging oxidative stress in biological systems, and they essentially "light up" in the presence of certain species generated from oxidative stress. The high ratio of the fluorescence quantum yield between the profluorescent nitroxide species and their nonradical adducts provides the sensitivity required for measuring a range of cellular redox environments. Furthermore, their reasonable 2PA cross sections provide for the option of using two-photon fluorescence microscopy, which circumvents commonly encountered disadvantages associated with one-photon imaging such as photobleaching and poor tissue penetration.

| S-EPMC3303203 | biostudies-literature

Synthesis of mono-nitroxides and of bis-nitroxides with varying electronic through-bond communication.

Project description:Nitroxides are a unique class of persistent radicals finding a wide range of applications, from spin probes to polarizing agents, and recently bis-nitroxides have been used as proof-of-concept molecules for quantum information processing. Here we present the syntheses of pyrroline-based nitroxide (NO) radicals and give a comparision of two possible synthetic routes to form two key intermediates, namely 2,2,5,5-tetramethylpyrroline-1-oxyl-3-acetylene (TPA) and 1-oxyl-2,2,5,5-tetramethylpyrroline-3-carboxylic acid (TPC). TPC and TPA were then used as precursors for the synthesis of three model compounds featuring two distant NO groups with a variable degree of conjugation and thus electronic communication between them. Using relatively facile synthetic routes, we produced a number of mono- and bis-nitroxides with the structures of multiple compounds unambiguously characterized by X-ray crystallography, while Continuous Wave Electron Paramagnetic Resonance (CW-EPR) allowed us to quantify the electronic communication in the bis-nitroxides. Our study expands the repertoire of mono- and bis-nitroxides with possibilities of exploiting them for studying quantum coherence effects and as polarizing agents.

| S-EPMC9811921 | biostudies-literature

Lanthanide chains containing the naphthalenyl nitronyl nitroxide radical.

Project description:In this contribution we report the synthesis, structure and magnetic properties of a family of lanthanide-based one dimensional compounds [Ln(hfac)3(NaphNN)] n , where LnIII = Gd (1), Dy(2), Tb(3) and NaphNN is the nitronyl nitroxide (NN) radical 2-(1'-naphthalenyl)-4,4,5,5-tetramethyl-4,5-dihydro-1H-Imidazole-3-oxide-1-oxyl. The crystal structure reveals well isolated chains with a twofold helical axis. Magnetic investigation of the gadolinium(iii) chains showed relevant intrachain interactions between Gd-NN nearest neighbors and also Gd-Gd and NN-NN next nearest neighbors. The magnetic interaction parameters were obtained by fitting the data with a six membered ring model. The stronger antiferromagnetic interaction between NN radicals was confirmed by investigation of the mononuclear complex [Y(hfac)3(NaphNN)2] (4) with a similar coordination environment. The dynamic magnetic properties of 2 and 3 were investigated by using the temperature and frequency dependence of the magnetic susceptibility evidencing single chain magnet dynamics under a zero dc field.

| S-EPMC9072088 | biostudies-literature

The Design of Radical Stacks: Nitronyl-Nitroxide-Substituted Heteropentacenes.

Project description:The first alkyl chain-anchored heteropentacene, dithieno[2,3-d;2',3'-d']benzo-[1,2-b;3,4-b']dithiophene (DTmBDT), mono- or disubstituted with a nitronyl nitroxide group has been prepared through a cross-coupling synthetic procedure of the corresponding dibromo-derivative (Br2-DTmBDT) with a nitronyl nitroxide-2-ide gold(I) complex. The synthesized nitroxides possess high kinetic stability, which allowed us to investigate their structure and thermal, optical, electrochemical, and magnetic properties. Single-crystal X-ray diffraction of both mono- and diradicals revealed that the nitronyl nitroxide group lies almost in the same plane as the nearest side thiophene ring. Such arrangement favors formation of edge-to-edge dimers, which then form close π-stacks surrounded by interdigitating alkyl chains. Before melting, these nitronyl nitroxide radical substituted molecules undergo at least two different phase transitions (PTs): for the monoradical, PTs are reversible, accompanied by hysteresis, and occur near 13 and 83 °C; the diradical upon heating shows a reversible PT with hysteresis in the temperature range 2-11 °C and an irreversible PT near 135 °C. PTs of this type are absent in Br2-DTmBDT. Therefore, the step-by-step substitution of bromine atoms by nitronyl nitroxide groups changes the structural organization of DTmBDT and induces the emergence of PTs. This knowledge may facilitate crystal engineering of π-stacked paramagnets and related molecular spin devices.

| S-EPMC5641907 | biostudies-literature

Nitroxides as Building Blocks for Nanoantioxidants.

Project description:Nitroxides are an important class of radical trapping antioxidants whose promising biological activities are connected to their ability to scavenge peroxyl (ROO•) radicals. We have measured the rate constants of the reaction with ROO• (kinh) for a series of 2,2,6,6-tetramethyl-1-piperidinyloxy (TEMPO) derivatives as 5.1 × 106, 1.1 × 106, 5.4 × 105, 3.7 × 105, 1.1 × 105, 1.9 × 105, and 5.6 × 104 M-1 s-1 for -H, -OH, -NH2, -COOH, -NHCOCH3, -CONH(CH2)3CH3, and ═O substituents in the 4 position, with a good Marcus relationship between log (kinh) and E° for the R2NO•/R2NO+ couple. Newly synthesized Pluronic-silica nanoparticles (PluS) having nitroxide moieties covalently bound to the silica surface (PluS-NO) through a TEMPO-CONH-R link and coumarin dyes embedded in the silica core, has kinh = 1.5 × 105 M-1 s-1. Each PluS-bound nitroxide displays an inhibition duration nearly double that of a structurally related "free" nitroxide. As each PluS-NO particle bears an average of 30 nitroxide units, this yields an overall ≈60-fold larger inhibition of the PluS-NO nanoantioxidant compared to the molecular analogue. The implications of these results for the development of novel nanoantioxidants based on nitroxide derivatives are discussed, such as the choice of the best linkage group and the importance of the regeneration cycle in determining the duration of inhibition.

| S-EPMC8289242 | biostudies-literature

Rapid-scan EPR of immobilized nitroxides.

Project description:X-band electron paramagnetic resonance spectra of immobilized nitroxides were obtained by rapid scan at 293 K. Scan widths were 155 G with 13.4 kHz scan frequency for (14)N-perdeuterated tempone and for T4 lysozyme doubly spin labeled with an iodoacetamide spirocyclohexyl nitroxide and 100 G with 20.9 kHz scan frequency for (15)N-perdeuterated tempone. These wide scans were made possible by modifications to our rapid-scan driver, scan coils made of Litz wire, and the placement of highly conducting aluminum plates on the poles of a Bruker 10″ magnet to reduce resistive losses in the magnet pole faces. For the same data acquisition time, the signal-to-noise for the rapid-scan absorption spectra was about an order of magnitude higher than for continuous wave first-derivative spectra recorded with modulation amplitudes that do not broaden the lineshapes.

| S-EPMC4247172 | biostudies-literature

Mechanistic Insights into the Triplet Sensitized Photochromism of Diarylethenes.

Project description:Operating photoswitchable molecules repetitively and reliably is crucial for most of their applications, in particular in (opto)electronic devices, and related to reversibility and fatigue resistance, which both critically depend on the photoisomerization mechanism defined by the substitution pattern. Two diarylethene photoswitches bearing biacetyl triplet sensitizers either at the periphery or at the core were investigated using both stationary as well as transient UV/Vis absorption spectroscopy ranging from the femtosecond to the microsecond time scale. The diarylethene with two biacetyl moieties at the periphery is switching predominantly from the triplet excited state, giving rise to an enhanced fatigue resistance. In contrast, the diarylethene bearing one diketone at the photoreactive inner carbon atom cyclizes from the singlet excited state and shows significantly higher quantum yields for both cyclization and cycloreversion.

| S-EPMC7318355 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data