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An insect nidovirus emerging from a primary tropical rainforest.

ABSTRACT: Tropical rainforests show the highest level of terrestrial biodiversity and may be an important contributor to microbial diversity. Exploitation of these ecosystems may foster the emergence of novel pathogens. We report the discovery of the first insect-associated nidovirus, tentatively named Cavally virus (CAVV). CAVV was found with a prevalence of 9.3% during a survey of mosquito-associated viruses along an anthropogenic disturbance gradient in Côte d'Ivoire. Analysis of habitat-specific virus diversity and ancestral state reconstruction demonstrated an origin of CAVV in a pristine rainforest with subsequent spread into agriculture and human settlements. Virus extension from the forest was associated with a decrease in virus diversity (P<0.01) and an increase in virus prevalence (P<0.00001). CAVV is an enveloped virus with large surface projections. The RNA genome comprises 20,108 nucleotides with seven major open reading frames (ORFs). ORF1a and -1b encode two large proteins that share essential features with phylogenetically higher representatives of the order Nidovirales, including the families Coronavirinae and Torovirinae, but also with families in a basal phylogenetic relationship, including the families Roniviridae and Arteriviridae. Genetic markers uniquely conserved in nidoviruses, such as an endoribonuclease- and helicase-associated zinc-binding domain, are conserved in CAVV. ORF2a and -2b are predicted to code for structural proteins S and N, respectively, while ORF3a and -3b encode proteins with membrane-spanning regions. CAVV produces three subgenomic mRNAs with 5' leader sequences (of different lengths) derived from the 5' end of the genome. This novel cluster of mosquito-associated nidoviruses is likely to represent a novel family within the order Nidovirales.

SUBMITTER: Zirkel F

PROVIDER: S-EPMC3111606 | biostudies-literature | 2011

REPOSITORIES: biostudies-literature

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An insect nidovirus emerging from a primary tropical rainforest.

Zirkel Florian F Kurth Andreas A Quan Phenix-Lan PL Briese Thomas T Ellerbrok Heinz H Pauli Georg G Leendertz Fabian H FH Lipkin W Ian WI Ziebuhr John J Drosten Christian C Junglen Sandra S

mBio 20110614 3

Tropical rainforests show the highest level of terrestrial biodiversity and may be an important contributor to microbial diversity. Exploitation of these ecosystems may foster the emergence of novel pathogens. We report the discovery of the first insect-associated nidovirus, tentatively named Cavally virus (CAVV). CAVV was found with a prevalence of 9.3% during a survey of mosquito-associated viruses along an anthropogenic disturbance gradient in Côte d'Ivoire. Analysis of habitat-specific virus ...[more]

PMID: 21673192

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Project description:Co-occurrence between mesopredators can be achieved by differentiation of prey, temporal activity, and spatial habitat use. The study of mesopredator interactions is a growing area of research in tropical forests and shedding new light on inter-guild competition between threatened vertebrate species that were previously little understood. Here, we investigate sympatry between the Sunda clouded leopard (Neofelis diardi) and Asiatic golden cat (Pardofelis temminckii) living in the Sumatran rainforests of Indonesia. We investigate: i) spatial overlap of predator-prey species using a combination of single-species occupancy modelling and Bayesian two-species modelling, while controlling for the possible influence of several confounding landscape variables; and, ii) temporal overlap between mesopredators and their shared prey through calculating their kernel density estimate associations. From four study areas, representing lowland, hill, sub-montane and montane forest, 28,404 camera trap nights were sampled. Clouded leopard and golden cat were respectively detected in 24.3% and 22.6% of the 292 sampling sites (camera stations) and co-occurred in 29.6% of the sites where they were detected. Golden cat occupancy was highest in the study area where clouded leopard occupancy was lowest and conversely lowest in the study area where clouded leopard occupancy was highest. However, our fine-scale (camera trap site) analyses found no evidence of avoidance between these two felid species. While both mesopredators exhibited highest spatial overlap with the larger-bodied prey species, temporal niche separation was also found. Clouded leopard was more nocturnal and, consequently, had higher temporal overlap with the more nocturnal prey species, such as porcupine and mouse deer, whereas the more diurnal golden cat had higher overlap with the strictly diurnal great argus pheasant. The Bayesian two species occupancy modelling approach applied in our study fills several important knowledge gaps of Sumatra's lesser known mesopredators and provides a replicable methodology for studying interspecific competition for other small-medium sized carnivore species in the tropics.

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An insect nidovirus emerging from a primary tropical rainforest.

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An insect nidovirus emerging from a primary tropical rainforest.

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