ADGO 2.0: interpreting microarray data and list of genes using composite annotations.

ABSTRACT: ADGO 2.0 is a web-based tool that provides composite interpretations for microarray data comparing two sample groups as well as lists of genes from diverse sources of biological information. Some other tools also incorporate composite annotations solely for interpreting lists of genes but usually provide highly redundant information. This new version has the following additional features: first, it provides multiple gene set analysis methods for microarray inputs as well as enrichment analyses for lists of genes. Second, it screens redundant composite annotations when generating and prioritizing them. Third, it incorporates union and subtracted sets as well as intersection sets. Lastly, users can upload their own gene sets (e.g. predicted miRNA targets) to generate and analyze new composit

SUBMITTER: Chi SM 

PROVIDER: S-EPMC3125784 | biostudies-literature | 2011 Jul

REPOSITORIES: biostudies-literature