ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes.
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ABSTRACT:
SUBMITTER: Varani AM
PROVIDER: S-EPMC3129680 | biostudies-literature | 2011
REPOSITORIES: biostudies-literature
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ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes.
Varani Alessandro M AM Siguier Patricia P Gourbeyre Edith E Charneau Vincent V Chandler Mick M
Genome biology 20110328 3
Insertion sequences (ISs) play a key role in prokaryotic genome evolution but are seldom well annotated. We describe a web application pipeline, ISsaga (http://issaga.biotoul.fr/ISsaga/issaga_index.php), that provides computational tools and methods for high-quality IS annotation. It uses established ISfinder annotation standards and permits rapid processing of single or multiple prokaryote genomes. ISsaga provides general prediction and annotation tools, information on genome context of individ ...[more]
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