Browse
Submit Data
Databases
API
Help

Dataset Information

28 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome sequence of strain IMCC2047, a novel marine member of the Gammaproteobacteria.

ABSTRACT: Strain IMCC2047 was isolated from the Yellow Sea using dilution-to-extinction culturing. The strain was shown to occupy a distinct phylogenetic position within the Gammaproteobacteria. Here we present the genome sequence of strain IMCC2047, which harbors genes for various metabolic pathways, including proteorhodopsin and ribulose bisphosphate carboxylase.

SUBMITTER: Kang I

PROVIDER: S-EPMC3133339 | biostudies-literature | 2011 Jul

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Genome sequence of strain IMCC2047, a novel marine member of the Gammaproteobacteria.

Kang Ilnam I Kang Dongmin D Oh Hyun-Myung HM Kim Hana H Kim Hee-Jin HJ Kang Tae-Wook TW Kim Seon-Young SY Cho Jang-Cheon JC

Journal of bacteriology 20110520 14

Strain IMCC2047 was isolated from the Yellow Sea using dilution-to-extinction culturing. The strain was shown to occupy a distinct phylogenetic position within the Gammaproteobacteria. Here we present the genome sequence of strain IMCC2047, which harbors genes for various metabolic pathways, including proteorhodopsin and ribulose bisphosphate carboxylase. ...[more]

PMID: 21602327

Similar Datasets

Genome sequence of strain IMCC1989, a novel member of the marine gammaproteobacteria.

Project description:Strain IMCC1989 is a novel member of the oligotrophic marine Gammaproteobacteria (OMG) group and is closely related with a symbiont group of the genera Teredinibacter and "Candidatus Endobugula." Here we present the genome sequence of strain IMCC1989, which was isolated from the Yellow Sea by using dilution-to-extinction culturing.

| S-EPMC3133343 | biostudies-other

Draft Genome Sequence of Strain LSUCC0057, a Member of the SAR92 Clade of Gammaproteobacteria.

Project description:We present the draft genome sequence of strain LSUCC0057, a member of the SAR92 clade of Gammaproteobacteria, isolated from coastal waters near Buras, LA. The genome contains proteorhodopsin and indicates the potential for aerobic heterotrophy, assimilatory sulfate reduction, and carotenoid biosynthesis.

| S-EPMC6588378 | biostudies-literature

Genome sequence of strain HTCC2083, a novel member of the marine clade Roseobacter.

Project description:Strain HTCC2083 was isolated from Oregon seawater using dilution-to-extinction culturing and represents a novel member of the Roseobacter clade. The draft genome sequence of HTCC2083 is presented here. The genome is predicted to contain genes for aerobic anoxygenic phototrophy, sulfite-oxidizing chemolithotrophy, anapleurotic CO(2) fixation, carbon monoxide oxidation, and dimethylsulfoniopropionate (DMSP) utilization.

| S-EPMC3019945 | biostudies-literature

Draft Genome Sequence of Strain LSUCC0112, a Gulf of Mexico Representative of the Oligotrophic Marine Gammaproteobacteria.

Project description:Here, we present the draft genome sequence of strain LSUCC0112, a cultured representative from the Gulf of Mexico that is phylogenetically close to the OM182 clade within oligotrophic marine Gammaproteobacteria LSUCC0112 shows the potential for aerobic heterotrophy, glycogen synthesis, flagellar motility, and assimilatory sulfate reduction.

| S-EPMC6606908 | biostudies-literature

Genome Sequence of "Candidatus Thioglobus autotrophica" Strain EF1, a Chemoautotroph from the SUP05 Clade of Marine Gammaproteobacteria.

Project description:Chemoautotrophic marine bacteria from the SUP05 clade of marine gammaproteobacteria often dominate low-oxygen waters in upwelling regions, fjords, and hydrothermal systems. Here, we announce the complete genome sequence of "Candidatus Thioglobus autotrophica" strain EF1, the first cultured chemoautotrophic representative from the SUP05 clade.

| S-EPMC4616170 | biostudies-literature

Genome Sequence of "Candidatus Thioglobus singularis" Strain PS1, a Mixotroph from the SUP05 Clade of Marine Gammaproteobacteria.

Project description:Mixotrophic marine bacteria from the SUP05 clade are ubiquitous in the ocean. Here, we announce the complete genome sequence of "Candidatus Thioglobus singularis" strain PS1, the first cultured mixotrophic representative from the SUP05 clade.

| S-EPMC4616169 | biostudies-literature

Genome sequence of strain TW15, a novel member of the genus Ruegeria, belonging to the marine Roseobacter clade.

Project description:Ruegeria sp. TW15, which belongs to the family Rhodobacteraceae, was isolated from an ark clam in the South Sea of Korea. Here is presented the draft genome sequence of Ruegeria sp. TW15 (4,490,771 bp with a G+C content of 55.7%), a member of the marine Roseobacter clade, which comprises up to 20% of the bacterioplankton in the coastal and oceanic mixed layer.

| S-EPMC3133300 | biostudies-literature

Complete Genome Sequence of "Candidatus Thioglobus sp." Strain NP1, an Open-Ocean Isolate from the SUP05 Clade of Marine Gammaproteobacteria.

Project description:"Candidatus Thioglobus sp." strain NP1 is an open-ocean isolate from the SUP05 clade of Gammaproteobacteria Whole-genome comparisons of strain NP1 to other sequenced isolates from the SUP05 clade indicate that it represents a new species of SUP05 that lacks the ability to fix inorganic carbon using the Calvin-Benson-Bassham cycle.

| S-EPMC6424205 | biostudies-literature

Complete Genome Sequence of Thalassococcus sp. Strain S3, a Marine Roseobacter Clade Member Capable of Degrading Carbazole.

Project description:We determined the complete genome sequence of Thalassococcus sp. strain S3, a marine carbazole degrader isolated from Tokyo Bay in Japan that carries genes for aerobic anoxygenic phototrophy. Strain S3 has a 4.7-Mb chromosome that harbors the carbazole-degradative gene cluster and three (96-, 63-, and 46-kb) plasmids.

| S-EPMC6624753 | biostudies-literature

Genome sequence of strain HIMB55, a novel marine gammaproteobacterium of the OM60/NOR5 clade.

Project description:Strain HIMB55 is a phylogenetically unique member of the OM60/NOR5 clade of the Gammaproteobacteria isolated from coastal seawater of Kaneohe Bay on the northeastern shore of Oahu, Hawaii, by extinction culturing in seawater-based oligotrophic medium. Here we present the genome sequence of strain HIMB55, including genes for bacteriochlorophyll-based phototrophy.

| S-EPMC3347081 | biostudies-other

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data