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Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2).

ABSTRACT: Desulfobacca acetoxidans Elferink et al. 1999 is the type species of the genus Desulfobacca, which belongs to the family Syntrophaceae in the class Deltaproteobacteria. The species was first observed in a study on the competition of sulfate-reducers and acetoclastic methanogens for acetate in sludge. D. acetoxidans is considered to be the most abundant acetate-degrading sulfate reducer in sludge. It is of interest due to its isolated phylogenetic location in the 16S rRNA-based tree of life. This is the second completed genome sequence of a member of the family Syntrophaceae to be published and only the third genome sequence from a member of the order Syntrophobacterales. The 3,282,536 bp long genome with its 2,969 protein-coding and 54 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

SUBMITTER: Goker M 

PROVIDER: S-EPMC3156406 | biostudies-literature | 2011 Jul

REPOSITORIES: biostudies-literature

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Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2).

Göker Markus M   Teshima Hazuki H   Lapidus Alla A   Nolan Matt M   Lucas Susan S   Hammon Nancy N   Deshpande Shweta S   Cheng Jan-Fang JF   Tapia Roxanne R   Han Cliff C   Goodwin Lynne L   Pitluck Sam S   Huntemann Marcel M   Liolios Konstantinos K   Ivanova Natalia N   Pagani Ioanna I   Mavromatis Konstantinos K   Ovchinikova Galina G   Pati Amrita A   Chen Amy A   Palaniappan Krishna K   Land Miriam M   Hauser Loren L   Brambilla Evelyne-Marie EM   Rohde Manfred M   Spring Stefan S   Detter John C JC   Woyke Tanja T   Bristow James J   Eisen Jonathan A JA   Markowitz Victor V   Hugenholtz Philip P   Kyrpides Nikos C NC   Klenk Hans-Peter HP  

Standards in genomic sciences 20110630 3

Desulfobacca acetoxidans Elferink et al. 1999 is the type species of the genus Desulfobacca, which belongs to the family Syntrophaceae in the class Deltaproteobacteria. The species was first observed in a study on the competition of sulfate-reducers and acetoclastic methanogens for acetate in sludge. D. acetoxidans is considered to be the most abundant acetate-degrading sulfate reducer in sludge. It is of interest due to its isolated phylogenetic location in the 16S rRNA-based tree of life. This  ...[more]

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