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PDBToSDF: Create ligand structure files from PDB file.


ABSTRACT: Protein Data Bank (PDB) file contains atomic data for protein and ligand in protein-ligand complexes. Structure data file (SDF) contains data for atoms, bonds, connectivity and coordinates of molecule for ligands. We describe PDBToSDF as a tool to separate the ligand data from pdb file for the calculation of ligand properties like molecular weight, number of hydrogen bond acceptors, hydrogen bond receptors easily.

SUBMITTER: Muppalaneni NB 

PROVIDER: S-EPMC3163917 | biostudies-literature |

REPOSITORIES: biostudies-literature

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