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Implementing photodissociation in an Orbitrap mass spectrometer.


ABSTRACT: We modified a dual pressure linear ion trap Orbitrap to permit infrared multiphoton dissociation (IRMPD) in the higher energy collisional dissociation (HCD) cell for high resolution analysis. A number of parameters, including the pressures of the C-trap and HCD cell, the radio frequency (rf) amplitude applied to the C-trap, and the HCD DC offset, were evaluated to optimize IRMPD efficiency and maintain a high signal-to-noise ratio. IRMPD was utilized for characterization of phosphopeptides, supercharged peptides, and N-terminal modified peptides, as well as for top-down protein analysis. The high resolution and high mass accuracy capabilities of the Orbitrap analyzer facilitated confident assignment of product ions arising from IRMPD.

SUBMITTER: Vasicek LA 

PROVIDER: S-EPMC3202985 | biostudies-literature | 2011 Jun

REPOSITORIES: biostudies-literature

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Implementing photodissociation in an Orbitrap mass spectrometer.

Vasicek Lisa A LA   Ledvina Aaron R AR   Shaw Jared J   Griep-Raming Jens J   Westphall Michael S MS   Coon Joshua J JJ   Brodbelt Jennifer S JS  

Journal of the American Society for Mass Spectrometry 20110409 6


We modified a dual pressure linear ion trap Orbitrap to permit infrared multiphoton dissociation (IRMPD) in the higher energy collisional dissociation (HCD) cell for high resolution analysis. A number of parameters, including the pressures of the C-trap and HCD cell, the radio frequency (rf) amplitude applied to the C-trap, and the HCD DC offset, were evaluated to optimize IRMPD efficiency and maintain a high signal-to-noise ratio. IRMPD was utilized for characterization of phosphopeptides, supe  ...[more]

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