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Phocine distemper virus in seals, east coast, United States, 2006.

ABSTRACT: In 2006 and 2007, elevated numbers of deaths among seals, constituting an unusual mortality event, occurred off the coasts of Maine and Massachusetts, United States. We isolated a virus from seal tissue and confirmed it as phocine distemper virus (PDV). We compared the viral hemagglutinin, phosphoprotein, and fusion (F) and matrix (M) protein gene sequences with those of viruses from the 1988 and 2002 PDV epizootics. The virus showed highest similarity with a PDV 1988 Netherlands virus, which raises the possibility that the 2006 isolate from the United States might have emerged independently from 2002 PDVs and that multiple lineages of PDV might be circulating among enzootically infected North American seals. Evidence from comparison of sequences derived from different tissues suggested that mutations in the F and M genes occur in brain tissue that are not present in lung, liver, or blood, which suggests virus persistence in the central nervous system.

SUBMITTER: Philip Earle JA

PROVIDER: S-EPMC3204746 | biostudies-literature |

REPOSITORIES: biostudies-literature

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Project description:This study examines 14 years (2004-2017) of surface aerosol composition data from the EPA IMPROVE network with a focus on the monthly profile, sources, and chemical nature of extreme dust events (>92nd percentile of fine soil concentration each month) impacting ten sites along the United States East Coast ranging in latitude from Florida to Maine. Based on trajectory, remote sensing, and reanalysis data, dust events were categorized into four source categories: African, Asian, Mix (African + Asian), and Other (anything other than African and Asian). The results reveal that extreme dust events account for between 3.3% and 4.6% of total available days depending on the site. March-April-May (MAM) had the most (174) dust events, followed by June-July-August (JJA) with 172, and then by September-October-November (SON) with 160 and December-January-February (DFJ) with 150. There is a variability in the predominant dust sources based on latitude, with African and Other sources more influential from North Carolina to the south, while Asian and Other were most important from New Jersey to the north. The Mix category is consistently the least frequent dust category at all sites. The African dust category was linked to the highest fine soil levels across the entire East Coast relative to other sources regardless of location. JJA is mostly impacted by African dust for sites ranging from Florida to New Jersey, while MAM is dominated by Asian dust for all sites. Mix events occurred mostly between April and October and Other events were most common outside of MAM and JJA seasons. Seven out of ten sites had Other as the most dominant source. Aerosol constituents organic carbon (OC) and elemental carbon (EC) had higher average concentrations in Other events (2.39 ± 0.78 μg m-3 and 0.79 ± 0.81 μg m-3, respectively) as compared to the other three source categories, suggestive of regional anthropogenic emissions. Moreover, the ratios of elements (Si:Al, K:Fe, Fe:Ca, Al:Ca) contributing to fine soil and PM2.5:PM10 exhibited distinct values depending on the dust source category and the site. This study builds on the growing evidence of the importance of long-range transport of dust in impacting distant regions and how a variety of sources can impact the U.S. East Coast at all times of the year.

Project description:BackgroundCanine distemper (CD) is a highly contagious, systemic, viral disease of dogs seen worldwide. Despite intensive vaccination in developed countries, recent reports suggest both the re-emergence and increased activity of Canine distemper virus (CDV) worldwide, including the United States. CDV is an RNA virus of the genus Morbillivirus within the family Paramyxoviridae. Viral genomic RNA encodes six structural proteins. Of the six structural proteins, the hemagglutinin (H) gene has the greatest genetic variation and is therefore a suitable target for molecular epidemiological studies. The majority of neutralizing epitopes are found on the H protein, making this gene also important for evaluation of changes over time that may result in antigenic differences among strains. The aim of this study was to determine the phylogenetic relationship of CDV strains circulating in the US.MethodsFifty-nine positive canine distemper virus samples collected from dogs from different regions and states from 2014 to 2017 were sequenced with a targeted next-generation sequencing (NGS) method. The sequences of the H, F, and P genes and the matrix-fusion (M-F) intergenic region of the amplified CDVs were analyzed individually.ResultsSequence analysis of the H gene revealed that there are at least 3 different lineages of CDV currently circulating in the US. These lineages include America-3 (Edomex), America-4, and a clade that was previously reported in association with an outbreak in Wyoming, which was linked to a domestic dog-breeding facility in Kansas in 2010. These lineages differ from the historically identified lineages in the US, including America-1, which contains the majority of the vaccine strains. Genetic differences may result in significant changes to the neutralizing epitopes that consequently may lead to vaccine failure. Phylogenetic analyses of the nucleotide sequences obtained in this study of the F and P genes and the M-F intergenic region with sequences from the GenBank database produced similar findings to the H gene analysis.ConclusionsThe CDV lineages currently circulating in the US differ from the historically identified lineages America-1. Continuous surveillance is required for monitoring circulating CDV strains in the US, to prevent potential vaccine breakthrough events.

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Phocine distemper virus in seals, east coast, United States, 2006.

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