JTraML: an open source Java API for TraML, the PSI standard for sharing SRM transitions.
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ABSTRACT:
SUBMITTER: Helsens K
PROVIDER: S-EPMC3208355 | biostudies-literature | 2011 Nov
REPOSITORIES: biostudies-literature
Publications
jTraML: an open source Java API for TraML, the PSI standard for sharing SRM transitions.
Helsens Kenny K Brusniak Mi-Youn MY Deutsch Eric E Moritz Robert L RL Martens Lennart L
Journal of proteome research 20111013 11
We here present jTraML, a Java API for the Proteomics Standards Initiative TraML data standard. The library provides fully functional classes for all elements specified in the TraML XSD document, as well as convenient methods to construct controlled vocabulary-based instances required to define SRM transitions. The use of jTraML is demonstrated via a two-way conversion tool between TraML documents and vendor specific files, facilitating the adoption process of this new community standard. The li ...[more]
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