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ExpressionPlot: a web-based framework for analysis of RNA-Seq and microarray gene expression data.

ABSTRACT: RNA-Seq and microarray platforms have emerged as important tools for detecting changes in gene expression and RNA processing in biological samples. We present ExpressionPlot, a software package consisting of a default back end, which prepares raw sequencing or Affymetrix microarray data, and a web-based front end, which offers a biologically centered interface to browse, visualize, and compare different data sets. Download and installation instructions, a user's manual, discussion group, and a prototype are available at http://expressionplot.com/.

SUBMITTER: Friedman BA 

PROVIDER: S-EPMC3218831 | biostudies-literature | 2011

REPOSITORIES: biostudies-literature

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ExpressionPlot: a web-based framework for analysis of RNA-Seq and microarray gene expression data.

Friedman Brad A BA   Maniatis Tom T  

Genome biology 20110728 7

RNA-Seq and microarray platforms have emerged as important tools for detecting changes in gene expression and RNA processing in biological samples. We present ExpressionPlot, a software package consisting of a default back end, which prepares raw sequencing or Affymetrix microarray data, and a web-based front end, which offers a biologically centered interface to browse, visualize, and compare different data sets. Download and installation instructions, a user's manual, discussion group, and a p  ...[more]

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