Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Draft genome sequence of Streptomyces sp. strain Wigar10, isolated from a surface-sterilized garlic bulb.

ABSTRACT: Streptomyces sp. strain Wigar10 was isolated from a surface-sterilized garlic bulb (Allium sativum var. Purple Stripe). Its genome encodes several novel secondary metabolite biosynthetic gene clusters and provides a genetic basis for further investigation of this strain's chemical biology and potential for interaction with its garlic host.

SUBMITTER: Klassen JL

PROVIDER: S-EPMC3232846 | biostudies-literature | 2011 Dec

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Draft genome sequence of Streptomyces sp. strain Wigar10, isolated from a surface-sterilized garlic bulb.

Klassen Jonathan L JL Adams Sandye M SM Bramhacharya Shanti S Giles Steven S SS Goodwin Lynne A LA Woyke Tanja T Currie Cameron R CR

Journal of bacteriology 20111201 24

Streptomyces sp. strain Wigar10 was isolated from a surface-sterilized garlic bulb (Allium sativum var. Purple Stripe). Its genome encodes several novel secondary metabolite biosynthetic gene clusters and provides a genetic basis for further investigation of this strain's chemical biology and potential for interaction with its garlic host. ...[more]

PMID: 22123757

Similar Datasets

Draft Genome Sequence of Streptomyces sp. Strain PBH53, Isolated from an Urban Environment.

Project description:We report the draft genome sequence of Streptomyces sp. strain PBH53, a strain isolated from an urban transit station in Ottawa, Canada. The analysis of the genome using the bioinformatics tool antiSMASH showed the presence of many unique natural product biosynthetic pathways.

| S-EPMC4520906 | biostudies-literature

Draft genome sequence of Streptomyces sp. strain ICN988, isolated from Gorgonia sp.

Project description:This study elucidates the draft genomic sequence of Streptomyces sp. strain ICN988, an actinomycete isolated from Gorgonia. The assembled genome consists of 6,122,654 bp with a GC content of 73%. A comprehensive analysis revealed 19 biosynthetic gene clusters.

| S-EPMC10508175 | biostudies-literature

Draft Genome Sequence of Streptomyces sp. Strain C8S0, Isolated from a Highly Oligotrophic Sediment.

Project description:Streptomyces spp. are prolific bacteria producing bioactive metabolites. We present the draft genome sequence of Streptomyces sp. strain C8S0, which was isolated from a highly oligotrophic sediment from the Cuatro Cienegas Basin (Mexico). The whole-genome assembly comprised 6,898,902 bp, with 18 biosynthetic gene clusters, including those for nonconventional terpenes, nonribosomal peptides, and polyketides.

| S-EPMC7118189 | biostudies-literature

Draft Genome Sequence of Streptomyces sp. Strain I05A-00742, Isolated in Shangri-La, China.

Project description:Streptomyces sp. strain I05A-00742 was isolated from a soil sample in Napahai in Shangri-La, Yunnan Province, China. Here, we report the draft genome sequence of Streptomyces sp. I05A-00742, which consists of an assembly size of 7,129,054 bp in 105 scaffolds with a G+C content of 72.43%.

| S-EPMC7317104 | biostudies-literature

Draft Genome Sequence of Streptomyces sp. Strain ICN903, Isolated from a Seaweed.

Project description:Here, we report the whole-genome sequence of the actinomycete Streptomyces sp. strain ICN903, which was isolated from seaweed of the genus Botryocladia. The whole-genome assembly contained 6,122,654 bp with 73% GC content. In total, 19 biosynthetic gene clusters (BGCs), including polyketides and terpenes, were predicted within the sequenced genome.

| S-EPMC9476897 | biostudies-literature

Draft Genome Sequence of Streptomyces sp. Strain FB2, Isolated from Rice Rhizosphere.

Project description:Streptomyces sp. strain FB2 is an actinomycete isolated from rice rhizosphere. A whole-genome assembly of the strain FB2 comprised 7,727,571 bp (number of contigs, 55; GC content, 71.96%). In total, 17 biosynthetic gene clusters (BGCs), including nonribosomal peptides, polyketides, terpenes, and ribosomally synthesized and posttranslationally modified peptides, were predicted.

| S-EPMC9202388 | biostudies-literature

Draft Genome Sequence of Plant Growth-Promoting Streptomyces sp. Strain SA51, Isolated from Olive Trees.

Project description:A streptomycete was isolated from the rhizosphere of olive trees in the autumn of 2004. Its molecular characterization showed the presence of metabolic pathways promoting plant growth and additional properties that indicate that this strain is a prospective agent for future biocontrol applications in planta We report here the draft genome sequence of Streptomyces avermitilis strain SA51.

| S-EPMC6940274 | biostudies-literature

Draft Genome Sequence of Pelagicola sp. Strain LXJ1103, Isolated from Coastal Surface Seawater.

Project description:Pelagicola sp. strain LXJ1103, a representative of a new species in the family Rhodobacteraceae, was isolated from the coastal surface waters in Xiamen, China. Here, we announce the draft genome sequence and initial findings from a preliminary analysis of strain LXJ1103.

| S-EPMC6256632 | biostudies-literature

Draft Whole-Genome Shotgun Sequence of Streptomyces sp. Strain ETH9427.

Project description:The draft genome of Streptomyces sp. strain ETH9427 was sequenced and assembled into three large scaffolds, a 7.745-Mb linear chromosome with terminal inverted repeats of 201?kb and two probable extrachromosomal elements. Thirty-two biosynthetic gene clusters (BGCs) were identified, out of which four are duplicated in the terminal inverted repeats.

| S-EPMC6256703 | biostudies-literature

Draft Genome Sequence of Freshwater-Derived Streptomyces sp. Strain BPSDS2, Isolated from Damte Stream, Northeast India.

Project description:We report the draft genome sequence of Streptomyces sp. strain BPSDS2, isolated from freshwater sediments in Northeast India. The draft genome has a size of 8.27 Mb and 7,559 protein-coding sequences.

| S-EPMC6813384 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data