Dataset Information

Defining seasonal marine microbial community dynamics.

ABSTRACT: Here we describe, the longest microbial time-series analyzed to date using high-resolution 16S rRNA tag pyrosequencing of samples taken monthly over 6 years at a temperate marine coastal site off Plymouth, UK. Data treatment effected the estimation of community richness over a 6-year period, whereby 8794 operational taxonomic units (OTUs) were identified using single-linkage preclustering and 21?130 OTUs were identified by denoising the data. The Alphaproteobacteria were the most abundant Class, and the most frequently recorded OTUs were members of the Rickettsiales (SAR 11) and Rhodobacteriales. This near-surface ocean bacterial community showed strong repeatable seasonal patterns, which were defined by winter peaks in diversity across all years. Environmental variables explained far more variation in seasonally predictable bacteria than did data on protists or metazoan biomass. Change in day length alone explains >65% of the variance in community diversity. The results suggested that seasonal changes in environmental variables are more important than trophic interactions. Interestingly, microbial association network analysis showed that correlations in abundance were stronger within bacterial taxa rather than between bacteria and eukaryotes, or between bacteria and environmental variables.

SUBMITTER: Gilbert JA

PROVIDER: S-EPMC3260500 | biostudies-literature | 2012 Feb

REPOSITORIES: biostudies-literature

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Defining seasonal marine microbial community dynamics.

Gilbert Jack A JA Steele Joshua A JA Caporaso J Gregory JG Steinbrück Lars L Reeder Jens J Temperton Ben B Huse Susan S McHardy Alice C AC Knight Rob R Joint Ian I Somerfield Paul P Fuhrman Jed A JA Field Dawn D

The ISME journal 20110818 2

Here we describe, the longest microbial time-series analyzed to date using high-resolution 16S rRNA tag pyrosequencing of samples taken monthly over 6 years at a temperate marine coastal site off Plymouth, UK. Data treatment effected the estimation of community richness over a 6-year period, whereby 8794 operational taxonomic units (OTUs) were identified using single-linkage preclustering and 21 130 OTUs were identified by denoising the data. The Alphaproteobacteria were the most abundant Class, ...[more]

PMID: 21850055

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Dataset Information

Defining seasonal marine microbial community dynamics.

Publications

Defining seasonal marine microbial community dynamics.

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