PGAP: pan-genomes analysis pipeline.
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ABSTRACT:
SUBMITTER: Zhao Y
PROVIDER: S-EPMC3268234 | biostudies-literature | 2012 Feb
REPOSITORIES: biostudies-literature
Publications
PGAP: pan-genomes analysis pipeline.
Zhao Yongbing Y Wu Jiayan J Yang Junhui J Sun Shixiang S Xiao Jingfa J Yu Jun J
Bioinformatics (Oxford, England) 20111129 3
<h4>Summary</h4>With the rapid development of DNA sequencing technology, increasing bacteria genome data enable the biologists to dig the evolutionary and genetic information of prokaryotic species from pan-genome sight. Therefore, the high-efficiency pipelines for pan-genome analysis are mostly needed. We have developed a new pan-genome analysis pipeline (PGAP), which can perform five analytic functions with only one command, including cluster analysis of functional genes, pan-genome profile an ...[more]
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