Ontology highlight
ABSTRACT:
SUBMITTER: Thomas-Chollier M
PROVIDER: S-EPMC3287167 | biostudies-literature | 2012 Feb
REPOSITORIES: biostudies-literature
Thomas-Chollier Morgane M Herrmann Carl C Defrance Matthieu M Sand Olivier O Thieffry Denis D van Helden Jacques J
Nucleic acids research 20111208 4
ChIP-seq is increasingly used to characterize transcription factor binding and chromatin marks at a genomic scale. Various tools are now available to extract binding motifs from peak data sets. However, most approaches are only available as command-line programs, or via a website but with size restrictions. We present peak-motifs, a computational pipeline that discovers motifs in peak sequences, compares them with databases, exports putative binding sites for visualization in the UCSC genome bro ...[more]