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Complete nucleotide sequences and genome organization of a cherry isolate of cherry leaf roll virus.

ABSTRACT: The complete nucleotide sequence of cherry leaf roll virus (CLRV, genus Nepovirus) from a naturally infected cherry tree (Prunus avium cv. Bing) in North America was determined. RNA1 and RNA2 consist of 7,893 and 6,492 nucleotides, respectively, plus a poly-(A) tail. Each RNA encodes a single potential open reading frame. The first 657 nucleotides of RNA1 and RNA2 are 99% identical and include the 5'-UTR and the first 214 deduced amino acids of the polyproteins following the first of two in-frame start codons. Phylogenetic analysis reveals close relationships between CLRV and members of subgroup C of the genus Nepovirus.

SUBMITTER: Eastwell KC

PROVIDER: S-EPMC3314827 | biostudies-literature | 2012 Apr

REPOSITORIES: biostudies-literature

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Complete nucleotide sequences and genome organization of a cherry isolate of cherry leaf roll virus.

Eastwell Kenneth C KC Mekuria Tefera A TA Druffel Keri L KL

Archives of virology 20120105 4

The complete nucleotide sequence of cherry leaf roll virus (CLRV, genus Nepovirus) from a naturally infected cherry tree (Prunus avium cv. Bing) in North America was determined. RNA1 and RNA2 consist of 7,893 and 6,492 nucleotides, respectively, plus a poly-(A) tail. Each RNA encodes a single potential open reading frame. The first 657 nucleotides of RNA1 and RNA2 are 99% identical and include the 5'-UTR and the first 214 deduced amino acids of the polyproteins following the first of two in-fram ...[more]

PMID: 22218961

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