Dataset Information

Chado controller: advanced annotation management with a community annotation system.

ABSTRACT:

Summary

We developed a controller that is compliant with the Chado database schema, GBrowse and genome annotation-editing tools such as Artemis and Apollo. It enables the management of public and private data, monitors manual annotation (with controlled vocabularies, structural and functional annotation controls) and stores versions of annotation for all modified features. The Chado controller uses PostgreSQL and Perl.

Availability

The Chado Controller package is available for download at http://www.gnpannot.org/content/chado-controller and runs on any Unix-like operating system, and documentation is available at http://www.gnpannot.org/content/chado-controller-doc The system can be tested using the GNPAnnot Sandbox at http://www.gnpannot.org/content/gnpannot-sandbox-form

Contact

valentin.guignon@cirad.fr; stephanie.sidibe-bocs@cirad.fr

Supplementary information

Supplementary data are available at Bioinformatics online.

SUBMITTER: Guignon V

PROVIDER: S-EPMC3315714 | biostudies-literature | 2012 Apr

REPOSITORIES: biostudies-literature

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Publications

Chado controller: advanced annotation management with a community annotation system.

Guignon Valentin V Droc Gaëtan G Alaux Michael M Baurens Franc-Christophe FC Garsmeur Olivier O Poiron Claire C Carver Tim T Rouard Mathieu M Bocs Stéphanie S

Bioinformatics (Oxford, England) 20120128 7

<h4>Summary</h4>We developed a controller that is compliant with the Chado database schema, GBrowse and genome annotation-editing tools such as Artemis and Apollo. It enables the management of public and private data, monitors manual annotation (with controlled vocabularies, structural and functional annotation controls) and stores versions of annotation for all modified features. The Chado controller uses PostgreSQL and Perl.<h4>Availability</h4>The Chado Controller package is available for dow ...[more]

PMID: 22285827

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Dataset Information

Chado controller: advanced annotation management with a community annotation system.

Summary

Availability

Contact

Supplementary information

Publications

Chado controller: advanced annotation management with a community annotation system.

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