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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

ABSTRACT: Here we present a standard developed by the Genomic Standards Consortium (GSC) for reporting marker gene sequences--the minimum information about a marker gene sequence (MIMARKS). We also introduce a system for describing the environment from which a biological sample originates. The 'environmental packages' apply to any genome sequence of known origin and can be used in combination with MIMARKS and other GSC checklists. Finally, to establish a unified standard for describing sequence data and to provide a single point of entry for the scientific community to access and learn about GSC checklists, we present the minimum information about any (x) sequence (MIxS). Adoption of MIxS will enhance our ability to analyze natural genetic diversity documented by massive DNA sequencing efforts from myriad ecosystems in our ever-changing biosphere.

SUBMITTER: Yilmaz P 

PROVIDER: S-EPMC3367316 | biostudies-literature | 2011 May

REPOSITORIES: biostudies-literature

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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

Yilmaz Pelin P   Kottmann Renzo R   Field Dawn D   Knight Rob R   Cole James R JR   Amaral-Zettler Linda L   Gilbert Jack A JA   Karsch-Mizrachi Ilene I   Johnston Anjanette A   Cochrane Guy G   Vaughan Robert R   Hunter Christopher C   Park Joonhong J   Morrison Norman N   Rocca-Serra Philippe P   Sterk Peter P   Arumugam Manimozhiyan M   Bailey Mark M   Baumgartner Laura L   Birren Bruce W BW   Blaser Martin J MJ   Bonazzi Vivien V   Booth Tim T   Bork Peer P   Bushman Frederic D FD   Buttigieg Pier Luigi PL   Chain Patrick S G PS   Charlson Emily E   Costello Elizabeth K EK   Huot-Creasy Heather H   Dawyndt Peter P   DeSantis Todd T   Fierer Noah N   Fuhrman Jed A JA   Gallery Rachel E RE   Gevers Dirk D   Gibbs Richard A RA   San Gil Inigo I   Gonzalez Antonio A   Gordon Jeffrey I JI   Guralnick Robert R   Hankeln Wolfgang W   Highlander Sarah S   Hugenholtz Philip P   Jansson Janet J   Kau Andrew L AL   Kelley Scott T ST   Kennedy Jerry J   Knights Dan D   Koren Omry O   Kuczynski Justin J   Kyrpides Nikos N   Larsen Robert R   Lauber Christian L CL   Legg Teresa T   Ley Ruth E RE   Lozupone Catherine A CA   Ludwig Wolfgang W   Lyons Donna D   Maguire Eamonn E   Methé Barbara A BA   Meyer Folker F   Muegge Brian B   Nakielny Sara S   Nelson Karen E KE   Nemergut Diana D   Neufeld Josh D JD   Newbold Lindsay K LK   Oliver Anna E AE   Pace Norman R NR   Palanisamy Giriprakash G   Peplies Jörg J   Petrosino Joseph J   Proctor Lita L   Pruesse Elmar E   Quast Christian C   Raes Jeroen J   Ratnasingham Sujeevan S   Ravel Jacques J   Relman David A DA   Assunta-Sansone Susanna S   Schloss Patrick D PD   Schriml Lynn L   Sinha Rohini R   Smith Michelle I MI   Sodergren Erica E   Spo Aymé A   Stombaugh Jesse J   Tiedje James M JM   Ward Doyle V DV   Weinstock George M GM   Wendel Doug D   White Owen O   Whiteley Andrew A   Wilke Andreas A   Wortman Jennifer R JR   Yatsunenko Tanya T   Glöckner Frank Oliver FO  

Nature biotechnology 20110501 5

Here we present a standard developed by the Genomic Standards Consortium (GSC) for reporting marker gene sequences--the minimum information about a marker gene sequence (MIMARKS). We also introduce a system for describing the environment from which a biological sample originates. The 'environmental packages' apply to any genome sequence of known origin and can be used in combination with MIMARKS and other GSC checklists. Finally, to establish a unified standard for describing sequence data and t  ...[more]

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