Dataset Information

Postglacial colonization of the Qinling Mountains: phylogeography of the swelled vent frog (Feirana quadranus).

ABSTRACT: BACKGROUND:The influence of Pleistocene climatic fluctuations on intraspecific diversification in the Qinling-Daba Mountains of East Asia remains poorly investigated. We tested hypotheses concerning refugia during the last glacial maximum (LGM) in this region by examining the phylogeography of the swelled vent frog (Feirana quadranus; Dicroglossidae, Anura, Amphibia). METHODOLOGY/PRINCIPAL FINDINGS:We obtained complete mitochondrial ND2 gene sequences of 224 individuals from 34 populations of Feirana quadranus for phylogeographic analyses. Additionally, we obtained nuclear tyrosinase gene sequences of 68 F. quadranus, one F. kangxianensis and three F. taihangnica samples to test for mitochondrial introgression among them. Phylogenetic analyses based on all genes revealed no introgression among them. Phylogenetic analyses based on ND2 datasets revealed that F. quadranus was comprised of six lineages which were separated by deep valleys; the sole exception is that the Main Qinling and Micang-Western Qinling lineages overlap in distribution. Analyses of population structure indicated restricted gene flow among lineages. Coalescent simulations and divergence dating indicated that the basal diversification within F. quadranus may be associated with the dramatic uplifts of the Tibetan Plateau during the Pliocene. Coalescent simulations indicated that Wuling, Daba, and Western Qinling-Micang-Longmen Mountains were refugia for F. quadranus during the LGM. Demographic analyses indicated that the Daba lineage experienced population size increase prior to the LGM but the Main Qinling and the Micang-Western Qinling lineages expanded in population size and range after the LGM, and the other lineages almost have stable population size or slight slow population size decline. CONCLUSIONS/SIGNIFICANCE:The Qinling-Daba Mountains hosted three refugia for F. quadranus during the LGM. Populations that originated in the Daba Mountains colonized the Main Qinling Mountains after the LGM. Recent sharp expansion of the Micang-Western Qinling and Main Qinling lineages probably contribute to their present-day secondary contact.

SUBMITTER: Wang B

PROVIDER: S-EPMC3405020 | biostudies-literature | 2012

REPOSITORIES: biostudies-literature

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Postglacial colonization of the Qinling Mountains: phylogeography of the swelled vent frog (Feirana quadranus).

Wang Bin B Jiang Jianping J Xie Feng F Li Cheng C

PloS one 20120725 7

<h4>Background</h4>The influence of Pleistocene climatic fluctuations on intraspecific diversification in the Qinling-Daba Mountains of East Asia remains poorly investigated. We tested hypotheses concerning refugia during the last glacial maximum (LGM) in this region by examining the phylogeography of the swelled vent frog (Feirana quadranus; Dicroglossidae, Anura, Amphibia).<h4>Methodology/principal findings</h4>We obtained complete mitochondrial ND2 gene sequences of 224 individuals from 34 po ...[more]

PMID: 22848532

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Project description:BackgroundSpecies with strict ecological requirements may provide new insights into the forces that shaped the geographic variation of genetic diversity. The Pyrenean desman, Galemys pyrenaicus, is a small semi-aquatic mammal that inhabits clean streams of the northern half of the Iberian Peninsula and is endangered in most of its geographic range, but its genetic structure is currently unknown. While the stringent ecological demands derived from its aquatic habitat might have caused a partition of the genetic diversity among river basins, Pleistocene glaciations would have generated a genetic pattern related to glacial refugia.ResultsTo study the relative importance of historical and ecological factors in the genetic structure of G. pyrenaicus, we used mitochondrial and intronic sequences of specimens covering most of the species range. We show, first, that the Pyrenean desman has very low levels of genetic diversity compared to other mammals. In addition, phylogenetic and dating analyses of the mitochondrial sequences reveal a strong phylogeographic structure of a Middle Pleistocene origin, suggesting that the main lineages arose during periods of glacial isolation. Furthermore, both the spatial distribution of nuclear and mitochondrial diversity and the results of species distribution modeling suggest the existence of a major glacial refugium in the northwestern part of the Iberian Peninsula. Finally, the main mitochondrial lineages show a striking parapatric distribution without any apparent exchange of mitochondrial haplotypes between the lineages that came into secondary contact (although with certain permeability to nuclear genes), indicating incomplete mixing after the post-glacial recolonization. On the other hand, when we analyzed the partition of the genetic diversity among river basins, the Pyrenean desman showed a lower than expected genetic differentiation among main rivers.ConclusionsThe analysis of mitochondrial and intronic markers in G. pyrenaicus showed the predominant effects of Pleistocene glaciations on the genetic structure of this species, while the distribution of the genetic diversity was not greatly influenced by the main river systems. These results and, particularly, the discovery of a marked phylogeographic structure, may have important implications for the conservation of the Pyrenean desman.

Project description:Qinling-Daba Mountains (QDM), which are located in central China, are considered as a significant climatic boundary delimiting north and south. However, the influence of complex topographic and climatic features makes it challenging to identify the exact location of the boundary, and different scholars delimit the boundary with significant differences. In addition, there is a gradual transition between climate zones, and no real dividing line exists. To explore the climate regionalization of the QDM, we focused on the identification of the transition zone rather than the exact location of the boundary between subtropical and temperate zones. Thus, we proposed a new workflow for climate regionalization based on the Geodetector-SVM model (a combination of Geodetector and support vector machines). First, we selected the spatial distribution data of six vegetation types (including typical subtropical and temperate vegetation) to represent the spatial distribution of climatic zones. Environmental factors (such as topography, temperature, precipitation, and soil) were used as explanatory variables for the spatial distribution of vegetation. Second, using the Geodetector-SVM model, the distribution characteristics and suitable environment of typical vegetation in different climatic zones are comprehensively explored. By analyzing the multiple boundaries between subtropical and temperate vegetation, the location of the transition zone of the QDM was identified. The results revealed the following: (1) The new workflow for climate regionalization based on the Geodetector-SVM model is powerful for the identification of the transition zone. The q-statistics are generally greater than 0.35, indicating that the transition zone between subtropical and temperate zones can highly reflect the character of the QDM; (2) From west to east, the transition zone mainly passes through the cities of Heishui County, Kang County, Liuba County, and Yichuan County and is approximately 30 km wide.

Dataset Information

Postglacial colonization of the Qinling Mountains: phylogeography of the swelled vent frog (Feirana quadranus).

Publications

Postglacial colonization of the Qinling Mountains: phylogeography of the swelled vent frog (Feirana quadranus).

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