Dataset Information

McaGUI: microbial community analysis R-Graphical User Interface (GUI).

ABSTRACT:

Unlabelled

Microbial communities have an important role in natural ecosystems and have an impact on animal and human health. Intuitive graphic and analytical tools that can facilitate the study of these communities are in short supply. This article introduces Microbial Community Analysis GUI, a graphical user interface (GUI) for the R-programming language (R Development Core Team, 2010). With this application, researchers can input aligned and clustered sequence data to create custom abundance tables and perform analyses specific to their needs. This GUI provides a flexible modular platform, expandable to include other statistical tools for microbial community analysis in the future.

Availability

The mcaGUI package and source are freely available as part of Bionconductor at http://www.bioconductor.org/packages/release/bioc/html/mcaGUI.html

SUBMITTER: Copeland WK

PROVIDER: S-EPMC3413388 | biostudies-literature | 2012 Aug

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

mcaGUI: microbial community analysis R-Graphical User Interface (GUI).

Copeland Wade K WK Krishnan Vandhana V Beck Daniel D Settles Matt M Foster James A JA Cho Kyu-Chul KC Day Mitch M Hickey Roxana R Schütte Ursel M E UM Zhou Xia X Williams Christopher J CJ Forney Larry J LJ Abdo Zaid Z

Bioinformatics (Oxford, England) 20120612 16

<h4>Unlabelled</h4>Microbial communities have an important role in natural ecosystems and have an impact on animal and human health. Intuitive graphic and analytical tools that can facilitate the study of these communities are in short supply. This article introduces Microbial Community Analysis GUI, a graphical user interface (GUI) for the R-programming language (R Development Core Team, 2010). With this application, researchers can input aligned and clustered sequence data to create custom abu ...[more]

PMID: 22692220

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