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CHRNB3 is more strongly associated with Fagerstrom test for cigarette dependence-based nicotine dependence than cigarettes per day: phenotype definition changes genome-wide association studies results.


ABSTRACT: AIMS:Nicotine dependence is a highly heritable disorder associated with severe medical morbidity and mortality. Recent meta-analyses have found novel genetic loci associated with cigarettes per day (CPD), a proxy for nicotine dependence. The aim of this paper is to evaluate the importance of phenotype definition (i.e., CPD versus Fagerström test for cigarette dependence (FTCD) score as a measure of nicotine dependence) on genome-wide association studies of nicotine dependence. DESIGN:Genome-wide association study. SETTING:Community sample. PARTICIPANTS:A total of 3365 subjects who had smoked at least one cigarette were selected from the Study of Addiction: Genetics and Environment (SAGE). Of the participants, 2267 were European Americans, 999 were African Americans. MEASUREMENTS:Nicotine dependence defined by FTCD score ?4, CPD. FINDINGS:The genetic locus most strongly associated with nicotine dependence was rs1451240 on chromosome 8 in the region of CHRNB3 [odds ratio (OR)?=?0.65, P?=?2.4?×?10(-8) ]. This association was further strengthened in a meta-analysis with a previously published data set (combined P?=?6.7?×?10(-16) , total n?=?4200). When CPD was used as an alternate phenotype, the association no longer reached genome-wide significance (? ?= ?-0.08, P?=?0.0004). CONCLUSIONS:Daily cigarette consumption and the Fagerstrom Test for Cigarette Dependence show different associations with polymorphisms in genetic loci.

SUBMITTER: Rice JP 

PROVIDER: S-EPMC3427406 | biostudies-literature | 2012 Nov

REPOSITORIES: biostudies-literature

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CHRNB3 is more strongly associated with Fagerström test for cigarette dependence-based nicotine dependence than cigarettes per day: phenotype definition changes genome-wide association studies results.

Rice John P JP   Hartz Sarah M SM   Agrawal Arpana A   Almasy Laura L   Bennett Siiri S   Breslau Naomi N   Bucholz Kathleen K KK   Doheny Kimberly F KF   Edenberg Howard J HJ   Goate Alison M AM   Hesselbrock Victor V   Howells William B WB   Johnson Eric O EO   Kramer John J   Krueger Robert F RF   Kuperman Samuel S   Laurie Cathy C   Manolio Teri A TA   Neuman Rosalind J RJ   Nurnberger John I JI   Porjesz Bernice B   Pugh Elizabeth E   Ramos Erin M EM   Saccone Nancy N   Saccone Scott S   Schuckit Marc M   Bierut Laura J LJ  

Addiction (Abingdon, England) 20120615 11


<h4>Aims</h4>Nicotine dependence is a highly heritable disorder associated with severe medical morbidity and mortality. Recent meta-analyses have found novel genetic loci associated with cigarettes per day (CPD), a proxy for nicotine dependence. The aim of this paper is to evaluate the importance of phenotype definition (i.e., CPD versus Fagerström test for cigarette dependence (FTCD) score as a measure of nicotine dependence) on genome-wide association studies of nicotine dependence.<h4>Design<  ...[more]

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