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3D structure elucidation of thermostable L2 lipase from Thermophilic Bacillus sp. L2.


ABSTRACT: The crystallization of proteins makes it possible to determine their structure by X-ray crystallography, and is therefore important for the analysis of protein structure-function relationships. L2 lipase was crystallized by using the J-tube counter diffusion method. A crystallization consisting of 20% PEG 6000, 50 mM MES pH 6.5 and 50 mM NaCl was found to be the best condition to produce crystals with good shape and size (0.5 × 0.1 × 0.2 mm). The protein concentration used for the crystallization was 3 mg/mL. L2 lipase crystal has two crystal forms, Shape 1 and Shape 2. Shape 2 L2 lipase crystal was diffracted at 1.5 Å and the crystal belongs to the orthorhombic space group P2(1)2(1)2(1), with unit-cell parameters a = 72.0, b = 81.8, c = 83.4 Å, ? = ? = ? = 90°. There is one molecule per asymmetric unit and the solvent content of the crystals is 56.9%, with a Matthew's coefficient of 2.85 Å Da(-1). The 3D structure of L2 lipase revealed topological organization of ?/?-hydrolase fold consisting of 11 ?-strands and 13 ?-helices. Ser-113, His-358 and Asp-317 were assigned as catalytic triad residues. One Ca(2+) and one Zn(2+) were found in the L2 lipase molecule.

SUBMITTER: Abd Rahman RN 

PROVIDER: S-EPMC3430292 | biostudies-literature | 2012

REPOSITORIES: biostudies-literature

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3D structure elucidation of thermostable L2 lipase from Thermophilic Bacillus sp. L2.

Raja Abd Rahman Raja Noor Zaliha RNZ   Mohd Shariff Fairolniza F   Basri Mahiran M   Salleh Abu Bakar AB  

International journal of molecular sciences 20120723 7


The crystallization of proteins makes it possible to determine their structure by X-ray crystallography, and is therefore important for the analysis of protein structure-function relationships. L2 lipase was crystallized by using the J-tube counter diffusion method. A crystallization consisting of 20% PEG 6000, 50 mM MES pH 6.5 and 50 mM NaCl was found to be the best condition to produce crystals with good shape and size (0.5 × 0.1 × 0.2 mm). The protein concentration used for the crystallizatio  ...[more]

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