Robust markers reflecting phylogeny and taxonomy of rhizobia.
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ABSTRACT:
SUBMITTER: Zhang YM
PROVIDER: S-EPMC3444505 | biostudies-literature | 2012
REPOSITORIES: biostudies-literature
Publications
Robust markers reflecting phylogeny and taxonomy of rhizobia.
Zhang Yan Ming YM Tian Chang Fu CF Sui Xin Hua XH Chen Wen Feng WF Chen Wen Xin WX
PloS one 20120917 9
Genomic ANI (Average Nucleotide Identity) has been found to be able to replace DNA-DNA hybridization in prokaryote taxonomy. The ANI of each of the core genes that has a phylogeny congruent with the reference species tree of rhizobia was compared to the genomic ANI. This allowed us to identify three housekeeping genes (SMc00019-truA-thrA) whose ANI reflected the intraspecies and interspecies genomic ANI among rhizobial strains, revealing an ANI gap (≥2%) between the inter- and intra-species comp ...[more]
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