Browse
Submit Data
Databases
API
Help

Dataset Information

38 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Alien invasions and the game of hide and seek in Patagonia.

ABSTRACT: The introduction, establishment and spread of alien species is a major threat to biodiversity and the provision of ecosystem services for human wellbeing. In order to reduce further loss of biodiversity and maintain productive and sustainable ecosystems, understanding the ecological mechanisms underlying species invasions and avoiding potentially harmful effects on native communities is urgently needed, but largely lacking. We here demonstrate, by means of hydroacoustics and advanced spatial modelling, how native fish species as a result of previous exposure to native predators may successfully respond to invasive novel predators through a complicated game of hide and seek, minimizing spatio-temporal overlap with predators, and potentially facilitating coexistence between native prey species (Galaxiids) and introduced novel predators (Salmonids) in a deep Andean lake, Patagonia.

SUBMITTER: Lindegren M

PROVIDER: S-EPMC3468591 | biostudies-literature | 2012

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Alien invasions and the game of hide and seek in Patagonia.

Lindegren Martin M Vigliano Pablo P Nilsson P Anders PA

PloS one 20121010 10

The introduction, establishment and spread of alien species is a major threat to biodiversity and the provision of ecosystem services for human wellbeing. In order to reduce further loss of biodiversity and maintain productive and sustainable ecosystems, understanding the ecological mechanisms underlying species invasions and avoiding potentially harmful effects on native communities is urgently needed, but largely lacking. We here demonstrate, by means of hydroacoustics and advanced spatial mod ...[more]

PMID: 23071496

Similar Datasets

A complex game of hide and seek: the search for new antifungals.

Project description:Fungal infections directly affect millions of people each year. In addition to the invasive fungal infections of humans, the plants and animals that comprise our primary food source are also susceptible to diseases caused by these eukaryotic microbes. The need for antifungals, not only for our medical needs, but also for use in agriculture and livestock causes a high demand for novel antimycotics. Herein, we provide an overview of the most commonly used antifungals in medicine and agriculture. We also present a summary of the recent progress (from 2010-2016) in the discovery/development of new agents against fungal strains of medical/agricultural relevance, as well as information related to their biological activity, their mode(s) of action, and their mechanism(s) of resistance.

| S-EPMC5067021 | biostudies-literature

A Game of Hide and Seek: Expectations of Clumpy Resources Influence Hiding and Searching Patterns.

Project description:Resources are often distributed in clumps or patches in space, unless an agent is trying to protect them from discovery and theft using a dispersed distribution. We uncover human expectations of such spatial resource patterns in collaborative and competitive settings via a sequential multi-person game in which participants hid resources for the next participant to seek. When collaborating, resources were mostly hidden in clumpy distributions, but when competing, resources were hidden in more dispersed (random or hyperdispersed) patterns to increase the searching difficulty for the other player. More dispersed resource distributions came at the cost of higher overall hiding (as well as searching) times, decreased payoffs, and an increased difficulty when the hider had to recall earlier hiding locations at the end of the experiment. Participants' search strategies were also affected by their underlying expectations, using a win-stay lose-shift strategy appropriate for clumpy resources when searching for collaboratively-hidden items, but moving equally far after finding or not finding an item in competitive settings, as appropriate for dispersed resources. Thus participants showed expectations for clumpy versus dispersed spatial resources that matched the distributions commonly found in collaborative versus competitive foraging settings.

| S-EPMC4495993 | biostudies-literature

Immunogenomics: molecular hide and seek.

Project description:Similar to other classical science disciplines, immunology has been embracing novel technologies and approaches giving rise to specialised sub-disciplines such as immunogenetics and, more recently, immunogenomics, which, in many ways, is the genome-wide application of immunogenetic approaches. Here, recent progress in the understanding of the immune sub-genome will be reviewed, and the ways in which immunogenomic datasets consisting of genetic and epigenetic variation, linkage disequilibrium and recombination can be harnessed for disease association and evolutionary studies will be discussed. The discussion will focus on data available for the major histocompatibility complex and the leukocyte receptor complex, the two most polymorphic regions of the human immune sub-genome.

| S-EPMC3525153 | biostudies-literature

Leptosphaeria maculans AvrLm9: a new player in the game of hide and seek with AvrLm4-7.

Project description:Blackleg disease of Brassica napus caused by Leptosphaeria maculans (Lm) is largely controlled by the deployment of race-specific resistance (R) genes. However, selection pressure exerted by R genes causes Lm to adapt and give rise to new virulent strains through mutation and deletion of effector genes. Therefore, a knowledge of effector gene function is necessary for the effective management of the disease. Here, we report the cloning of Lm effector AvrLm9 which is recognized by the resistance gene Rlm9 in B. napus cultivar Goéland. AvrLm9 was mapped to scaffold 7 of the Lm genome, co-segregating with the previously reported AvrLm5 (previously known as AvrLmJ1). Comparison of AvrLm5 alleles amongst the 37 re-sequenced Lm isolates and transgenic complementation identified a single point mutation correlating with the AvrLm9 phenotype. Therefore, we renamed this gene as AvrLm5-9 to reflect the dual specificity of this locus. Avrlm5-9 transgenic isolates were avirulent when inoculated on the B. napus cultivar Goéland. The expression of AvrLm5-9 during infection was monitored by RNA sequencing. The recognition of AvrLm5-9 by Rlm9 is masked in the presence of AvrLm4-7, another Lm effector. AvrLm5-9 and AvrLm4-7 do not interact, and AvrLm5-9 is expressed in the presence of AvrLm4-7. AvrLm5-9 is the second Lm effector for which host recognition is masked by AvrLm4-7. An understanding of this complex interaction will provide new opportunities for the engineering of broad-spectrum recognition.

| S-EPMC6638032 | biostudies-literature

Hide-and-seek game in pathogen genome: Transposon elements play an important role in shaping population diversification of rice blast fungus Magnaporthe oryzae

Project description:RNA-seq of 16 M. oryzae rice isolates in hyphal stage

2024-03-16 | GSE205351 | GEO

Behavioral innovation promotes alien bird invasions.

Project description:Behavioral innovation is believed to represent the ability of species to adapt to novel environments and to thus affect the observed establishment success of alien species in a new range. However, the relative importance of behavioral innovation in explaining alien species establishment among key event-, location-, and species-level factors remains poorly evaluated. In addition, the effects of technical innovation in food searching and handling techniques and consumer innovation in the use of new foods on establishment success are not clear. Here, based on a global dataset including information on 247 species across 9,899 successful and 2,370 failed introduction events spanning 199 countries or regions worldwide, we show that the behavioral innovation rate is a key factor facilitating alien bird establishment success after considering propagule pressure, climate matching, historical invasional meltdown, and life-history traits. Furthermore, we find that technical innovation is more influential than consumer innovation in explaining establishment success. Our results contribute to a deeper understanding of the effect of behavioral innovation on the establishment success of alien species in new ranges and may help predict the response of both native and alien species to accelerating global change during the Anthropocene.

| S-EPMC8488305 | biostudies-literature

Hide and seek: interplay between influenza viruses and B cells.

Project description:Influenza virus constantly acquires genetic mutations/reassortment in the major surface protein, hemagglutinin (HA), resulting in the generation of strains with antigenic variations. There are, however, HA epitopes that are conserved across influenza viruses and are targeted by broadly protective antibodies. A goal for the next-generation influenza vaccines is to stimulate B-cell responses against such conserved epitopes in order to provide broad protection against divergent influenza viruses. Broadly protective B cells, however, are not easily activated by HA antigens with native structure, because the virus has multiple strategies to escape from the humoral immune responses directed to the conserved epitopes. One such strategy is to hide the conserved epitopes from the B-cell surveillance by steric hindrance. Technical advancement in the analysis of the human B-cell antigen receptor (BCR) repertoire has dissected the BCRs to HA epitopes that are hidden in the native structure but are targeted by broadly protective antibodies. We describe here the characterization and function of broadly protective antibodies and strategies that enable B cells to seek these hidden epitopes, with potential implications for the development of universal influenza vaccines.

| S-EPMC7478158 | biostudies-literature

Helminth parasites of alien freshwater fishes in Patagonia (Argentina).

Project description:A survey of the helminth parasites of alien freshwater fishes from Argentinean Patagonia is presented, based on samples taken from 2010 to 2017 and including previous published records. A total of 1129 fishes were collected, belonging to 11 species from 7 families. We surveyed 34 localities in 12 river basins, and found 43 parasite taxa (15 digeneans, 14 monogeneans, 5 cestodes, 5 nematodes, and 4 acanthocephalans), belonging to 22 families. Data are presented as a parasite/host list with information on host species and localities, site of infection, parasite life-history stage, origin, previous records in Patagonia, and accession numbers to vouchers. The most frequently found helminths were monogeneans and digeneans. Our data suggest that invading fish in Patagonia have transmitted fewer parasite species than they have received by spillback. Twenty-three (53%) of the parasites seem to be acquired by the exotic fishes from native hosts, while 15 helminths were co-introduced along with their exotic fish host and continue to parasitize these alien fish but did not invade native hosts; 4 of these species were introduced with carp, 3 with Cheirodon interruptus, 3 with Corydoras paleatus, 3 with Cnesterodon decemmaculatus, 1 with Oncorhynchus tshawytscha, and 1 with Jenynsia multidentata. The majority of these co-introduced parasites came from the Brazilic ichthyogeographic region (10 species). This is the first review of helminth parasites of alien fishes in Argentina; in total 12 new records of parasites for Argentina, 6 new records of parasites for Patagonia, and 29 new host-parasite records are presented here. This list is far from complete, however, given that some basins in southern Patagonia remain unexplored in terms of parasite detection.

| S-EPMC6174270 | biostudies-literature

HIV entry: a game of hide-and-fuse?

Project description:Human Immunodeficiency Virus (HIV) initiates infection by fusing its envelope membrane with the cell membrane through a process which is triggered through interactions with the cellular receptor and coreceptor. Although the mechanism of HIV fusion has been extensively studied, the point of its entry into cells remains controversial. HIV has long been thought to fuse directly with the cell plasma membrane. However, several lines of evidence suggest that endocytic entry of HIV can lead to infection and, moreover, that endocytosis could be the predominant HIV entry pathway into different cell types. This review discusses recent findings pertinent to HIV entry routes and novel approaches to pinpoint the sites of virus entry.

| S-EPMC4077273 | biostudies-literature

Alien plant invasions of protected areas in Java, Indonesia.

Project description:Alien plants are invading protected areas worldwide, but there is little information from tropical Asia. Java has the longest record of human occupation in Asia and today supports 145 m people. Remnants of natural ecosystems survive in 12 small National Parks surrounded by dense human populations, making them highly vulnerable to invasions. We surveyed eight of these, along a rainfall gradient from lowland rainforest with >3000 mm annual rainfall to savanna with <1500 mm, and a 0-3158 m altitudinal gradient, using 403 10 × 5 m plots along trails. We found 67 invasive alien plant species, of which 33 occurred in only one park and two (Chromolaena odorata and Lantana camara) in all. Historical factors relating to plant introduction appeared to be as important as environmental factors in determining which species occurred in which park, while within parks canopy cover and altitude were generally most influential. Spread away from trails was only evident in open habitats, including natural savannas in Baluran National Park, threatened by invasion of Acacia nilotica. Existing control attempts for invasive aliens are reactive, localized, and intermittent, and insufficient resources are currently available for the early detection, prompt action, and continued monitoring that are needed.

| S-EPMC5570924 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data