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Evolution of associative learning in chemical networks.

ABSTRACT: Organisms that can learn about their environment and modify their behaviour appropriately during their lifetime are more likely to survive and reproduce than organisms that do not. While associative learning - the ability to detect correlated features of the environment - has been studied extensively in nervous systems, where the underlying mechanisms are reasonably well understood, mechanisms within single cells that could allow associative learning have received little attention. Here, using in silico evolution of chemical networks, we show that there exists a diversity of remarkably simple and plausible chemical solutions to the associative learning problem, the simplest of which uses only one core chemical reaction. We then asked to what extent a linear combination of chemical concentrations in the network could approximate the ideal Bayesian posterior of an environment given the stimulus history so far? This Bayesian analysis revealed the 'memory traces' of the chemical network. The implication of this paper is that there is little reason to believe that a lack of suitable phenotypic variation would prevent associative learning from evolving in cell signalling, metabolic, gene regulatory, or a mixture of these networks in cells.

SUBMITTER: McGregor S

PROVIDER: S-EPMC3486861 | biostudies-literature | 2012

REPOSITORIES: biostudies-literature

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Evolution of associative learning in chemical networks.

McGregor Simon S Vasas Vera V Husbands Phil P Fernando Chrisantha C

PLoS computational biology 20121101 11

Organisms that can learn about their environment and modify their behaviour appropriately during their lifetime are more likely to survive and reproduce than organisms that do not. While associative learning - the ability to detect correlated features of the environment - has been studied extensively in nervous systems, where the underlying mechanisms are reasonably well understood, mechanisms within single cells that could allow associative learning have received little attention. Here, using i ...[more]

PMID: 23133353

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Project description:While there is an abundance of research on neural networks that are "inspired" by the brain, few mimic the critical temporal compute features that allow the brain to efficiently perform complex computations. Even fewer methods emulate the heterogeneity of learning produced by biological neurons. Memory devices, such as memristors, are also investigated for their potential to implement neuronal functions in electronic hardware. However, memristors in computing architectures typically operate as non-volatile memories, either as storage or as the weights in a multiply-and-accumulate function that requires direct access to manipulate memristance via a costly learning algorithm. Hence, the integration of memristors into architectures as time-dependent computational units is studied, starting with the development of a compact and versatile mathematical model that is capable of emulating flux-linkage controlled analog (FLCA) memristors and their unique temporal characteristics. The proposed model, which is validated against experimental FLCA LixNbO2 intercalation devices, is used to create memristive circuits that mimic neuronal behavior such as desensitization, paired-pulse facilitation, and spike-timing-dependent plasticity. The model is used to demonstrate building blocks of biomimetic learning via dynamical memristive circuits that implement biomimetic learning rules in a self-training neural network, with dynamical memristive weights that are capable of associative lifelong learning. Successful training of the dynamical memristive neural network to perform image classification of handwritten digits is shown, including lifelong learning by having the dynamical memristive network relearn different characters in succession. An analog computing architecture that learns to associate input-to-input correlations is also introduced, with examples demonstrating image classification and pattern recognition without convolution. The biomimetic functions shown in this paper result from fully ion-driven memristive circuits devoid of integrating capacitors and thus are instructive for exploiting the immense potential of memristive technology for neuromorphic computation in hardware and allowing a common architecture to be applied to a wide range of learning rules, including STDP, magnitude, frequency, and pulse shape among others, to enable an inorganic implementation of the complex heterogeneity of biological neural systems.

Dataset Information

Evolution of associative learning in chemical networks.

Publications

Evolution of associative learning in chemical networks.

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