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Building an efficient curation workflow for the Arabidopsis literature corpus.


ABSTRACT: TAIR (The Arabidopsis Information Resource) is the model organism database (MOD) for Arabidopsis thaliana, a model plant with a literature corpus of about 39 000 articles in PubMed, with over 4300 new articles added in 2011. We have developed a literature curation workflow incorporating both automated and manual elements to cope with this flood of new research articles. The current workflow can be divided into two phases: article selection and curation. Structured controlled vocabularies, such as the Gene Ontology and Plant Ontology are used to capture free text information in the literature as succinct ontology-based annotations suitable for the application of computational analysis methods. We also describe our curation platform and the use of text mining tools in our workflow. Database URL: www.arabidopsis.org

SUBMITTER: Li D 

PROVIDER: S-EPMC3515862 | biostudies-literature | 2012

REPOSITORIES: biostudies-literature

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Building an efficient curation workflow for the Arabidopsis literature corpus.

Li Donghui D   Berardini Tanya Z TZ   Muller Robert J RJ   Huala Eva E  

Database : the journal of biological databases and curation 20121206


TAIR (The Arabidopsis Information Resource) is the model organism database (MOD) for Arabidopsis thaliana, a model plant with a literature corpus of about 39 000 articles in PubMed, with over 4300 new articles added in 2011. We have developed a literature curation workflow incorporating both automated and manual elements to cope with this flood of new research articles. The current workflow can be divided into two phases: article selection and curation. Structured controlled vocabularies, such a  ...[more]

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