Dataset Information

A conserved molecular basis for photoperiod adaptation in two temperate legumes.

ABSTRACT: Legumes were among the first plant species to be domesticated, and accompanied cereals in expansion of agriculture from the Fertile Crescent into diverse environments across the Mediterranean basin, Europe, Central Asia, and the Indian subcontinent. Although several recent studies have outlined the molecular basis for domestication and eco-geographic adaptation in the two main cereals from this region, wheat and barley, similar questions remain largely unexplored in their legume counterparts. Here we identify two major loci controlling differences in photoperiod response between wild and domesticated pea, and show that one of these, high response to photoperiod (HR), is an ortholog of early flowering 3 (ELF3), a gene involved in circadian clock function. We found that a significant proportion of flowering time variation in global pea germplasm is controlled by HR, with a single, widespread functional variant conferring altered circadian rhythms and the reduced photoperiod response associated with the spring habit. We also present evidence that ELF3 has a similar role in lentil, another major legume crop, with a distinct functional variant contributing to reduced photoperiod response in cultivars widely deployed in short-season environments. Our results identify the factor likely to have permitted the successful prehistoric expansion of legume cultivation to Northern Europe, and define a conserved genetic basis for major adaptive changes in flowering phenology and growth habit in an important crop group.

SUBMITTER: Weller JL

PROVIDER: S-EPMC3529011 | biostudies-literature | 2012 Dec

REPOSITORIES: biostudies-literature

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A conserved molecular basis for photoperiod adaptation in two temperate legumes.

Weller James L JL Liew Lim Chee LC Hecht Valérie F G VF Rajandran Vinodan V Laurie Rebecca E RE Ridge Stephen S Wenden Bénédicte B Vander Schoor Jacqueline K JK Jaminon Odile O Blassiau Christelle C Dalmais Marion M Rameau Catherine C Bendahmane Abdelhafid A Macknight Richard C RC Lejeune-Hénaut Isabelle I

Proceedings of the National Academy of Sciences of the United States of America 20121203 51

Legumes were among the first plant species to be domesticated, and accompanied cereals in expansion of agriculture from the Fertile Crescent into diverse environments across the Mediterranean basin, Europe, Central Asia, and the Indian subcontinent. Although several recent studies have outlined the molecular basis for domestication and eco-geographic adaptation in the two main cereals from this region, wheat and barley, similar questions remain largely unexplored in their legume counterparts. He ...[more]

PMID: 23213200

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Project description:The effects of winter chilling, spring forcing temperature, and photoperiod on spring phenology are well known for many European and North American species, but the environmental cues that regulate the spring phenology of East Asian species have not yet been thoroughly investigated. Here, we conducted a growth chamber experiment to test the effects of chilling (controlled by different lengths of exposure to natural chilling conditions), forcing temperature (12, 15, or 18°C) and photoperiod (14 or 10 h) on first flowering date (FFD) of six woody species (three shrubs and three trees) native to East Asia. The three-way analysis of variance (ANOVA) separately for each species showed that the effects of chilling and forcing temperature were significant for almost all species (P < 0.05). Averaged over all chilling and photoperiod treatments, the number of days until FFD decreased by 2.3-36.1 days when the forcing temperature increased by 3°C. More chilling days reduced the time to FFD by 0.7-26 days, when averaged over forcing and photoperiod treatments. A longer photoperiod could advance the FFD by 1.0-5.6 days, on average, but its effect was only significant for two species (including one tree and one shrub). The effects of forcing temperature and photoperiod interacted with chilling for half of the studied species, being stronger in the low chilling than high chilling treatment. These results could be explained by the theory and model of growing degree-days (GDD). Increased exposure to chilling coupled to a longer photoperiod reduced the GDD requirement for FFD, especially when plants grew under low chilling conditions. However, shrubs (except Viburnum dilatatum) had lower chilling and heat requirements than trees, suggesting that, by leafing out sooner, they engage in a more opportunistic life strategy to maximize their growing season, especially before canopy closure from trees' foliage. Our results confirmed the varying effects of these three cues on the flowering phenology of woody species native to East Asia. In future climate change scenarios, spring warming is likely to advance the spring phenology of those woody species, although the reduced chilling and shorter photoperiod may partly offset this spring warming effect.

Project description:BACKGROUND: CO and FT orthologs, belonging to the BBX and PEBP family, respectively, have important and conserved roles in the photoperiod regulation of flowering time in plants. Soybean genome experienced at least three rounds of whole genome duplications (WGDs), which resulted in multiple copies of about 75% of genes. Subsequent subfunctionalization is the main fate for paralogous gene pairs during the evolutionary process. RESULTS: The phylogenic relationships revealed that CO orthologs were widespread in the plant kingdom while FT orthologs were present only in angiosperms. Twenty-eight CO homologous genes and twenty-four FT homologous genes were gained in the soybean genome. Based on the collinear relationship, the soybean ancestral CO ortholog experienced three WGD events, but only two paralogous gene pairs (GmCOL1/2 and GmCOL5/13) survived in the modern soybean. The paralogous gene pairs, GmCOL1/2 or GmCOL5/13, showed similar expression patterns in pair but different between pairs, indicating that they functionally diverged. GmFTL1 to 7 were derived from the same ancestor prior to the whole genome triplication (WGT) event, and after the Legume WGD event the ancestor diverged into two branches, GmFTL3/5/7 and GmFTL1/2/4/6. GmFTL7 were truncated in the N-terminus compared to other FT-lineage genes, but ubiquitously expressed. Expressions of GmFTL1 to 6 were higher in leaves at the flowering stage than that at the seedling stage. GmFTL3 was expressed at the highest level in all tissues except roots at the seedling stage, and its circadian pattern was different from the other five ones. The transcript of GmFTL6 was highly accumulated in seedling roots. The circadian rhythms of GmCOL5/13 and GmFT1/2/4/5/6 were synchronized in a day, demonstrating the complicate relationship of CO-FT regulons in soybean leaves. Over-expression of GmCOL2 did not rescue the flowering phenotype of the Arabidopsis co mutant. However, ectopic expression of GmCOL5 did rescue the co mutant phenotype. All GmFTL1 to 6 showed flower-promoting activities in Arabidopsis. CONCLUSIONS: After three recent rounds of whole genome duplications in the soybean, the paralogous genes of CO-FT regulons showed subfunctionalization through expression divergence. Then, only GmCOL5/13 kept flowering-promoting activities, while GmFTL1 to 6 contributed to flowering control. Additionally, GmCOL5/13 and GmFT1/2/3/4/5/6 showed similar circadian expression profiles. Therefore, our results suggested that GmCOL5/13 and GmFT1/2/3/4/5/6 formed the complicate CO-FT regulons in the photoperiod regulation of flowering time in soybean.

Dataset Information

A conserved molecular basis for photoperiod adaptation in two temperate legumes.

Publications

A conserved molecular basis for photoperiod adaptation in two temperate legumes.

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