Unknown

Dataset Information

0

N-glycoproteome of E14.Tg2a mouse embryonic stem cells.


ABSTRACT: E14.Tg2a mouse embryonic stem (mES) cells are a widely used host in gene trap and gene targeting techniques. Molecular characterization of host cells will provide background information for a better understanding of functions of the knockout genes. Using a highly selective glycopeptide-capture approach but ordinary liquid chromatography coupled mass spectrometry (LC-MS), we characterized the N-glycoproteins of E14.Tg2a cells and analyzed the close relationship between the obtained N-glycoproteome and cell-surface proteomes. Our results provide a global view of cell surface protein molecular properties, in which receptors seem to be much more diverse but lower in abundance than transporters on average. In addition, our results provide a systematic view of the E14.Tg2a N-glycosylation, from which we discovered some striking patterns, including an evolutionarily preserved and maybe functionally selected complementarity between N-glycosylation and the transmembrane structure in protein sequences. We also observed an environmentally influenced N-glycosylation pattern among glycoenzymes and extracellular matrix proteins. We hope that the acquired information enhances our molecular understanding of mES E14.Tg2a as well as the biological roles played by N-glycosylation in cell biology in general.

SUBMITTER: Sun B 

PROVIDER: S-EPMC3565968 | biostudies-literature | 2013

REPOSITORIES: biostudies-literature

altmetric image

Publications


E14.Tg2a mouse embryonic stem (mES) cells are a widely used host in gene trap and gene targeting techniques. Molecular characterization of host cells will provide background information for a better understanding of functions of the knockout genes. Using a highly selective glycopeptide-capture approach but ordinary liquid chromatography coupled mass spectrometry (LC-MS), we characterized the N-glycoproteins of E14.Tg2a cells and analyzed the close relationship between the obtained N-glycoproteom  ...[more]

Similar Datasets

| S-EPMC4535964 | biostudies-literature
2007-07-10 | GSE8395 | GEO
2014-07-10 | GSE53149 | GEO
| S-EPMC4060510 | biostudies-literature
| S-EPMC6408820 | biostudies-literature
2014-07-10 | E-GEOD-53149 | biostudies-arrayexpress
| S-EPMC4934932 | biostudies-literature
| S-EPMC2868360 | biostudies-literature
| S-EPMC2582619 | biostudies-literature
2013-10-19 | GSE49434 | GEO