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Database resources for the tuberculosis community.

ABSTRACT: Access to online repositories for genomic and associated "-omics" datasets is now an essential part of everyday research activity. It is important therefore that the Tuberculosis community is aware of the databases and tools available to them online, as well as for the database hosts to know what the needs of the research community are. One of the goals of the Tuberculosis Annotation Jamboree, held in Washington DC on March 7th-8th 2012, was therefore to provide an overview of the current status of three key Tuberculosis resources, TubercuList (tuberculist.epfl.ch), TB Database (www.tbdb.org), and Pathosystems Resource Integration Center (PATRIC, www.patricbrc.org). Here we summarize some key updates and upcoming features in TubercuList, and provide an overview of the PATRIC site and its online tools for pathogen RNA-Seq analysis.

SUBMITTER: Lew JM

PROVIDER: S-EPMC3592388 | biostudies-literature | 2013 Jan

REPOSITORIES: biostudies-literature

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Database resources for the tuberculosis community.

Lew Jocelyne M JM Mao Chunhong C Shukla Maulik M Warren Andrew A Will Rebecca R Kuznetsov Dmitry D Xenarios Ioannis I Robertson Brian D BD Gordon Stephen V SV Schnappinger Dirk D Cole Stewart T ST Sobral Bruno B

Tuberculosis (Edinburgh, Scotland) 20130117 1

Access to online repositories for genomic and associated "-omics" datasets is now an essential part of everyday research activity. It is important therefore that the Tuberculosis community is aware of the databases and tools available to them online, as well as for the database hosts to know what the needs of the research community are. One of the goals of the Tuberculosis Annotation Jamboree, held in Washington DC on March 7th-8th 2012, was therefore to provide an overview of the current status ...[more]

PMID: 23332401

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