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The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.


ABSTRACT: BACKGROUND: BioHackathon 2010 was the third in a series of meetings hosted by the Database Center for Life Sciences (DBCLS) in Tokyo, Japan. The overall goal of the BioHackathon series is to improve the quality and accessibility of life science research data on the Web by bringing together representatives from public databases, analytical tool providers, and cyber-infrastructure researchers to jointly tackle important challenges in the area of in silico biological research. RESULTS: The theme of BioHackathon 2010 was the 'Semantic Web', and all attendees gathered with the shared goal of producing Semantic Web data from their respective resources, and/or consuming or interacting those data using their tools and interfaces. We discussed on topics including guidelines for designing semantic data and interoperability of resources. We consequently developed tools and clients for analysis and visualization. CONCLUSION: We provide a meeting report from BioHackathon 2010, in which we describe the discussions, decisions, and breakthroughs made as we moved towards compliance with Semantic Web technologies - from source provider, through middleware, to the end-consumer.

SUBMITTER: Katayama T 

PROVIDER: S-EPMC3598643 | biostudies-literature | 2013

REPOSITORIES: biostudies-literature

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The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.

Katayama Toshiaki T   Wilkinson Mark D MD   Micklem Gos G   Kawashima Shuichi S   Yamaguchi Atsuko A   Nakao Mitsuteru M   Yamamoto Yasunori Y   Okamoto Shinobu S   Oouchida Kenta K   Chun Hong-Woo HW   Aerts Jan J   Afzal Hammad H   Antezana Erick E   Arakawa Kazuharu K   Aranda Bruno B   Belleau Francois F   Bolleman Jerven J   Bonnal Raoul Jp RJ   Chapman Brad B   Cock Peter Ja PJ   Eriksson Tore T   Gordon Paul Mk PM   Goto Naohisa N   Hayashi Kazuhiro K   Horn Heiko H   Ishiwata Ryosuke R   Kaminuma Eli E   Kasprzyk Arek A   Kawaji Hideya H   Kido Nobuhiro N   Kim Young Joo YJ   Kinjo Akira R AR   Konishi Fumikazu F   Kwon Kyung-Hoon KH   Labarga Alberto A   Lamprecht Anna-Lena AL   Lin Yu Y   Lindenbaum Pierre P   McCarthy Luke L   Morita Hideyuki H   Murakami Katsuhiko K   Nagao Koji K   Nishida Kozo K   Nishimura Kunihiro K   Nishizawa Tatsuya T   Ogishima Soichi S   Ono Keiichiro K   Oshita Kazuki K   Park Keun-Joon KJ   Prins Pjotr P   Saito Taro L TL   Samwald Matthias M   Satagopam Venkata P VP   Shigemoto Yasumasa Y   Smith Richard R   Splendiani Andrea A   Sugawara Hideaki H   Taylor James J   Vos Rutger A RA   Withers David D   Yamasaki Chisato C   Zmasek Christian M CM   Kawamoto Shoko S   Okubo Kosaku K   Asai Kiyoshi K   Takagi Toshihisa T  

Journal of biomedical semantics 20130211 1


<h4>Background</h4>BioHackathon 2010 was the third in a series of meetings hosted by the Database Center for Life Sciences (DBCLS) in Tokyo, Japan. The overall goal of the BioHackathon series is to improve the quality and accessibility of life science research data on the Web by bringing together representatives from public databases, analytical tool providers, and cyber-infrastructure researchers to jointly tackle important challenges in the area of in silico biological research.<h4>Results</h4  ...[more]

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