Dataset Information

Set-level threshold-free tests on the intrinsic volumes of SPMs.

ABSTRACT: Conventionally, set-level inference on statistical parametric maps (SPMs) is based on the topological features of an excursion set above some threshold-for example, the number of clusters or Euler characteristic. The expected Euler characteristic-under the null hypothesis-can be predicted from an intrinsic measure or volume of the SPM, such as the resel counts or the Lipschitz-Killing curvatures (LKC). We propose a new approach that performs a null hypothesis omnibus test on an SPM, by testing whether its intrinsic volume (described by LKC coefficients) is different from the volume of the underlying residual fields: intuitively, whether the number of peaks in the statistical field (testing for signal) and the residual fields (noise) are consistent or not. Crucially, this new test requires no arbitrary feature-defining threshold but is nevertheless sensitive to distributed or spatially extended patterns. We show the similarities between our approach and conventional topological inference-in terms of false positive rate control and sensitivity to treatment effects-in two and three dimensional simulations. The test consistently improves on classical approaches for moderate (>20) degrees of freedom. We also demonstrate the application to real data and illustrate the comparison of the expected and observed Euler characteristics over the complete threshold range.

SUBMITTER: Barnes GR

PROVIDER: S-EPMC3625125 | biostudies-literature | 2013 Mar

REPOSITORIES: biostudies-literature

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Set-level threshold-free tests on the intrinsic volumes of SPMs.

Barnes Gareth R GR Ridgway Gerard R GR Flandin Guillaume G Woolrich Mark M Friston Karl K

NeuroImage 20121212

Conventionally, set-level inference on statistical parametric maps (SPMs) is based on the topological features of an excursion set above some threshold-for example, the number of clusters or Euler characteristic. The expected Euler characteristic-under the null hypothesis-can be predicted from an intrinsic measure or volume of the SPM, such as the resel counts or the Lipschitz-Killing curvatures (LKC). We propose a new approach that performs a null hypothesis omnibus test on an SPM, by testing w ...[more]

PMID: 23246858

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Project description:Objective:To study the best possible luteinizing hormone (LH) threshold to predict ovulation within the 24, 48, and 72?h. Design:Observational study. Setting:Multicenter collaborative study. Patients:A total of 107 women. Interventions:Women collected daily first morning urine for hormonal assessment and underwent serial ovarian ultrasound. This is a secondary analysis of 283 cycles. Main outcome measures:The sensitivity, specificity, positive and negative predictive values, and positive and negative likelihood ratios were estimated for varying ranges of LH thresholds. Receiver operating characteristic curves and cost-benefit ratios were used to estimate the best thresholds to predict ovulation. Results:The best scenario to predict ovulation at random was within 24?h after the first single positive test. The false-positive rate was found to increase as (1) the cycle progressed or (2) two or three consecutive tests were used, or (3) ovulation was predicted within 48 or 72?h. Testing earlier in the cycle increases the predictive value of the test. The ideal thresholds to predict ovulation ranged between 25 and 30?mIU/ml with a PPV (50-60%), NPV (98%), LR+ (20-30), and LR- (0.5). At least, one day with LH ?25?mIU/ml followed by three negatives (LH <25) occurred before ovulation in 31% of all cycles. When used throughout the cycle and evaluated together, peak-fertility type mucus with a positive LH test ?25?mIU/ml provides a higher specificity than either mucus or LH testing alone (97-99 vs. 77-95 vs. 91%, respectively). Conclusion:We identified that beginning LH testing earlier in the cycle (day 7) with a threshold of 25-30?mIU/ml may present the best predictive value for ovulation within 24?h. However, prediction by LH testing alone may be affected negatively by several confounding factors so LH testing alone should not be used to define the end of the fertile window. Complementary markers should be further investigated to predict ovulation and identify the fertile window. The use of the peak cervical mucus along with an LH test may provide a higher specificity and predictive value than either of them alone. We recommend that manufacturers disclose their tests' threshold to the public.

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Set-level threshold-free tests on the intrinsic volumes of SPMs.

Publications

Set-level threshold-free tests on the intrinsic volumes of SPMs.

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