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Evidence of Recombinant Citrus tristeza virus Isolate Occurring in Acid Lime cv. Pant Lemon Orchard in Uttarakhand Terai Region of Northern Himalaya in India.

ABSTRACT: The present study for the first time describes biological and molecular characterization of Citrus tristeza virus (CTV) occurring in the Terai area of Uttarakhand State in Northern Himalaya region of India. Direct antigen coated-ELISA and reverse transcriptase-polymerase chain reaction (RT-PCR) detected the CTV infection in Acid lime cv. Pant lemon (Citrus aurantifolia) orchards of Pantnagar with an estimated disease incidence of 16.6-20.5 %. To know the biological and genetic properties, an isolate, CTV Pant 4 was characterized. Isolate Pant 4 could be graft transmitted to Kinnow, Nagpur and Darjeeling mandarins, Mosambi sweet orange, Kagzi lime, Sweet lime, Sour orange but not to Rough lemon. The sequence analyses of the 5'ORF1a (3038 nucleotides) of LPro domain and 3'end (2058 nt) covering ORF7-ORF10 regions of the CTV genome revealed that Pant 4 was closely related to the previously reported Indian CTV isolate, Kpg3 from Northeastern Himalaya region with 97 and 98 % sequence identity, respectively. Whereas, it differed from the previously reported CTV isolate B165 from Southern India with 79 and 92 % identity, respectively for 5'ORF1a and 3' end regions. Recombination and SplitsTree decomposition analyses indicated that CTV isolate Pant 4 was a recombinant isolate originating from Kpg3 as a major and B165 as a minor donor.

SUBMITTER: Singh JK

PROVIDER: S-EPMC3650192 | biostudies-literature | 2013 Jun

REPOSITORIES: biostudies-literature

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Evidence of Recombinant Citrus tristeza virus Isolate Occurring in Acid Lime cv. Pant Lemon Orchard in Uttarakhand Terai Region of Northern Himalaya in India.

Singh Jaywant Kumar JK Tarafdar Avijit A Sharma Susheel Kumar SK Biswas Kajal Kumar KK

Indian journal of virology : an official organ of Indian Virological Society 20121218 1

The present study for the first time describes biological and molecular characterization of Citrus tristeza virus (CTV) occurring in the Terai area of Uttarakhand State in Northern Himalaya region of India. Direct antigen coated-ELISA and reverse transcriptase-polymerase chain reaction (RT-PCR) detected the CTV infection in Acid lime cv. Pant lemon (Citrus aurantifolia) orchards of Pantnagar with an estimated disease incidence of 16.6-20.5 %. To know the biological and genetic properties, an iso ...[more]

PMID: 24426255

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Project description:Carbonization of agricultural and forestry wastes is the main use of biochar application in agriculture. In this study, the effects of biochar on the physical and chemical properties of soil and diversity in rhizosphere microorganisms, leaf nutrients and fruit quality of acid red soil in "Shatangju" (Citrus reticulate cv.) orchard were studied using organic wastes and small-scale carbonization furnaces from orchards were used to produce biochar. The results showed that the finished rate of biochar produced from the organic wastes in the orchard was approximately 37%, and the carbon content of the finished product was as high as 80%. The results suggested that the biochar produced in the orchard could meet the annual consumption of the orchard. Applying biochar can improve the physical and chemical properties of acid soil in the "Shatangju" orchard by enhancing the availability of various mineral nutrients such as nitrogen, phosphorus, potassium, calcium, magnesium and boron. The species and quantity of root and rhizosphere microbial communities (fungi, bacteria and archaea) increased, and the dominant bacterial group changed, manifested in the increase in microbial diversity. Biochar directly affected the soil pH value and increased the soil organic carbon content, which may be the main reason for the change in microbial diversity in the soil and rhizosphere of "Shatangju" in the orchard and pot tests. The fruit quality of each treatment group with biochar was also better than that of the control group and improved fruit coloring. In the pure soil test, whether or not chemical fertilizer was applied, 3% biochar amendments can provide a suitable pH value for "Shatangju" growth and are relatively stable. Regardless of whether or not fertilizer was applied, 1.5%-3% biochar improved the soil in the pot test. In the field, the biochar at a rate of 2.4 kg/plant to 3.6 kg/plant, respectively, was the best in improving soil physical and chemical properties, foliar nutrition and fruit quality. Therefore, the amount of biochar added in the open environment (if the garden) can be slightly adjusted according to the results of the closed environment test (pure soil test and pot test). In this experiment, we explored the self-recycling of organic carbon, mainly through the preparation of a simple small-scale biochar furnace suitable for the use by orchards, and selected the appropriate amount of biochar to improve the physical and chemical conditions of "Shatangju" orchard soil and increase fruit quality.

Project description:Citrus tristeza virus (CTV) (genus Closterovirus, family Closteroviridae) is the causal agent of devastating epidemics that changed the course of the citrus industry. Adapted to replicate in phloem cells of a few species within the family Rutaceae and to transmission by a few aphid species, CTV and citrus probably coevolved for centuries at the site of origin of citrus plants. CTV dispersal to other regions and its interaction with new scion varieties and rootstock combinations resulted in three distinct syndromes named tristeza, stem pitting and seedling yellows. The first, inciting decline of varieties propagated on sour orange, has forced the rebuilding of many citrus industries using tristeza-tolerant rootstocks. The second, inducing stunting, stem pitting and low bearing of some varieties, causes economic losses in an increasing number of countries. The third is usually observed by biological indexing, but rarely in the field. CTV polar virions are composed of two capsid proteins and a single-stranded, positive-sense genomic RNA (gRNA) of approximately 20 kb, containing 12 open reading frames (ORFs) and two untranslated regions (UTRs). ORFs 1a and 1b, encoding proteins of the replicase complex, are directly translated from the gRNA, and together with the 5' and 3'UTRs are the only regions required for RNA replication. The remaining ORFs, expressed via 3'-coterminal subgenomic RNAs, encode proteins required for virion assembly and movement (p6, p65, p61, p27 and p25), asymmetrical accumulation of positive and negative strands during RNA replication (p23), or suppression of post-transcriptional gene silencing (p25, p20 and p23), with the role of proteins p33, p18 and p13 as yet unknown. Analysis of genetic variation in CTV isolates revealed (1) conservation of genomes in distant geographical regions, with a limited repertoire of genotypes, (2) uneven distribution of variation along the gRNA, (3) frequent recombination events and (4) different selection pressures shaping CTV populations. Measures to control CTV damage include quarantine and budwood certification programmes, elimination of infected trees, use of tristeza-tolerant rootstocks, or cross protection with mild isolates, depending on CTV incidence and on the virus strains and host varieties predominant in each region. Incorporating resistance genes into commercial varieties by conventional breeding is presently unfeasible, whereas incorporation of pathogen-derived resistance by plant transformation has yielded variable results, indicating that the CTV-citrus interaction may be more specific and complex than initially thought. A deep understanding of the interactions between viral proteins and host and vector factors will be necessary to develop reliable and sound control measures.

Dataset Information

Evidence of Recombinant Citrus tristeza virus Isolate Occurring in Acid Lime cv. Pant Lemon Orchard in Uttarakhand Terai Region of Northern Himalaya in India.

Publications

Evidence of Recombinant Citrus tristeza virus Isolate Occurring in Acid Lime cv. Pant Lemon Orchard in Uttarakhand Terai Region of Northern Himalaya in India.

Similar Datasets

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