PKscan: a program to identify H-type RNA pseudoknots in any RNA sequence with unlimited length.
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ABSTRACT:
SUBMITTER: Huang X
PROVIDER: S-EPMC3705612 | biostudies-literature | 2013
REPOSITORIES: biostudies-literature
Publications
PKscan: a program to identify H-type RNA pseudoknots in any RNA sequence with unlimited length.
Huang Xiaolan X Du Zhihua Z Cheng Jie J Cheng Qiang Q
Bioinformation 20130525 9
A computer program written in C++ has been developed which can detect all potential H-type RNA pseudoknots within any given RNA sequence. There is no limit on the length of the input sequence. A validation run of the program using the full-length (8173 nt) genomic mRNA of simian retrovirus type-1 (SRV-1) identifies the established -1 frameshift stimulating pseudokont at the gagpro junction as the most stable pseudoknot within the genomic mRNA. ...[more]
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