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Advantages of Single-Molecule Real-Time Sequencing in High-GC Content Genomes.


ABSTRACT: Next-generation sequencing has become the most widely used sequencing technology in genomics research, but it has inherent drawbacks when dealing with high-GC content genomes. Recently, single-molecule real-time sequencing technology (SMRT) was introduced as a third-generation sequencing strategy to compensate for this drawback. Here, we report that the unbiased and longer read length of SMRT sequencing markedly improved genome assembly with high GC content via gap filling and repeat resolution.

SUBMITTER: Shin SC 

PROVIDER: S-EPMC3720884 | biostudies-literature | 2013

REPOSITORIES: biostudies-literature

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Advantages of Single-Molecule Real-Time Sequencing in High-GC Content Genomes.

Shin Seung Chul SC   Ahn Do Hwan DH   Kim Su Jin SJ   Lee Hyoungseok H   Oh Tae-Jin TJ   Lee Jong Eun JE   Park Hyun H  

PloS one 20130723 7


Next-generation sequencing has become the most widely used sequencing technology in genomics research, but it has inherent drawbacks when dealing with high-GC content genomes. Recently, single-molecule real-time sequencing technology (SMRT) was introduced as a third-generation sequencing strategy to compensate for this drawback. Here, we report that the unbiased and longer read length of SMRT sequencing markedly improved genome assembly with high GC content via gap filling and repeat resolution. ...[more]

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