Unknown

Dataset Information

0

Computational modeling of the p7 monomer from HCV and its interaction with small molecule drugs.


ABSTRACT: Hepatitis C virus p7 protein is a 63 amino acid polytopic protein with two transmembrane domains (TMDs) and one of the prime targets for anti HCV drug development. A bio-inspired modeling pathway is used to generate plausible computational models of the two TMDs forming the monomeric protein model. A flexible region between Leu-13 and Gly-15 is identified for TMD11-32 and a region around Gly-46 to Trp-48 for TMD236-58. Mutations of the tyrosine residues in TMD236-58 into phenylalanine and serine are simulated to identify their role in shaping TMD2. Lowest energy structures of the two TMDs connected with the loop residues are used for a posing study in which small molecule drugs BIT225, amantadine, rimantadine and NN-DNJ, are identified to bind to the loop region. BIT225 is identified to interact with the backbone of the functionally important residues Arg-35 and Trp-36.

SUBMITTER: Wang YT 

PROVIDER: S-EPMC3724979 | biostudies-literature |

REPOSITORIES: biostudies-literature

Similar Datasets

| S-EPMC4451521 | biostudies-literature
| S-EPMC3466443 | biostudies-literature
| S-EPMC5021286 | biostudies-literature
| S-EPMC2907074 | biostudies-literature
| S-EPMC4067622 | biostudies-literature
| S-EPMC8853643 | biostudies-literature
| S-EPMC9867408 | biostudies-literature
| S-EPMC6148373 | biostudies-literature
| S-EPMC3221691 | biostudies-literature
| S-EPMC6311893 | biostudies-other