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SBEToolbox: A Matlab Toolbox for Biological Network Analysis.

ABSTRACT: We present SBEToolbox (Systems Biology and Evolution Toolbox), an open-source Matlab toolbox for biological network analysis. It takes a network file as input, calculates a variety of centralities and topological metrics, clusters nodes into modules, and displays the network using different graph layout algorithms. Straightforward implementation and the inclusion of high-level functions allow the functionality to be easily extended or tailored through developing custom plugins. SBEGUI, a menu-driven graphical user interface (GUI) of SBEToolbox, enables easy access to various network and graph algorithms for programmers and non-programmers alike. All source code and sample data are freely available at https://github.com/biocoder/SBEToolbox/releases.

SUBMITTER: Konganti K

PROVIDER: S-EPMC3767578 | biostudies-literature | 2013

REPOSITORIES: biostudies-literature

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SBEToolbox: A Matlab Toolbox for Biological Network Analysis.

Konganti Kranti K Wang Gang G Yang Ence E Cai James J JJ

Evolutionary bioinformatics online 20130901

We present SBEToolbox (Systems Biology and Evolution Toolbox), an open-source Matlab toolbox for biological network analysis. It takes a network file as input, calculates a variety of centralities and topological metrics, clusters nodes into modules, and displays the network using different graph layout algorithms. Straightforward implementation and the inclusion of high-level functions allow the functionality to be easily extended or tailored through developing custom plugins. SBEGUI, a menu-dr ...[more]

PMID: 24027418

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